Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GFX43_RS09110 Genome accession   NZ_CP046448
Coordinates   1761760..1762527 (+) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1756760..1767527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS09080 (GFX43_009080) pgpH 1757056..1759191 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  GFX43_RS09085 (GFX43_009085) ybeY 1759192..1759665 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  GFX43_RS09090 (GFX43_009090) unpK 1759646..1760017 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  GFX43_RS09095 (GFX43_009095) - 1760136..1760546 (+) 411 WP_003230049.1 cytidine deaminase -
  GFX43_RS09100 (GFX43_009100) era 1760527..1761432 (+) 906 WP_003230051.1 GTPase Era -
  GFX43_RS09105 (GFX43_009105) yqzL 1761580..1761723 (+) 144 WP_003230053.1 YqzL family protein -
  GFX43_RS09110 (GFX43_009110) recO 1761760..1762527 (+) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  GFX43_RS09115 (GFX43_009115) glyQ 1762825..1763712 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  GFX43_RS09120 (GFX43_009120) glyS 1763705..1765744 (+) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  GFX43_RS09125 (GFX43_009125) ccpN 1765877..1766515 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  GFX43_RS09130 (GFX43_009130) ppsR 1766541..1767353 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=404393 GFX43_RS09110 WP_015384118.1 1761760..1762527(+) (recO) [Bacillus subtilis strain ZD01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=404393 GFX43_RS09110 WP_015384118.1 1761760..1762527(+) (recO) [Bacillus subtilis strain ZD01]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment