Detailed information NTG0404389

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HWU09_RS04720
• Genome accession: NZ_CP058287
• Coordinates: 1004120..1005295 (+)
• Length: 391 a.a.
• NCBI ID: WP_237003058.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL04
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 999120..1010295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU09_RS04695	-	999458..1000354 (+)	897	WP_237003055.1	response regulator	-
HWU09_RS04700	-	1000590..1001456 (+)	867	WP_237003938.1	5'-3' exonuclease	-
HWU09_RS04705	-	1001464..1002714 (-)	1251	WP_237003056.1	outer membrane family protein	-
HWU09_RS04710	-	1002882..1003748 (+)	867	WP_237003057.1	DnaJ C-terminal domain-containing protein	-
HWU09_RS04715	-	1003758..1004123 (+)	366	WP_187857943.1	heat shock protein transcriptional repressor HspR	-
HWU09_RS04720	rarA	1004120..1005295 (+)	1176	WP_237003058.1	replication-associated recombination protein A	Machinery gene
HWU09_RS04725	fur	1005455..1005907 (+)	453	WP_187852298.1	ferric iron uptake transcriptional regulator	-
HWU09_RS04730	-	1005927..1006424 (-)	498	WP_237003059.1	DUF2147 domain-containing protein	-
HWU09_RS04735	-	1006421..1006957 (-)	537	WP_237003060.1	YhcH/YjgK/YiaL family protein	-
HWU09_RS04740	fliY	1006984..1007856 (-)	873	WP_237003061.1	flagellar motor switch protein FliY	-
HWU09_RS04745	fliM	1007860..1008924 (-)	1065	WP_000763582.1	flagellar motor switch protein FliM	-
HWU09_RS04750	-	1008917..1009693 (-)	777	WP_237003062.1	RNA polymerase sigma factor FliA	-
HWU09_RS04755	-	1009671..1009985 (-)	315	WP_000868000.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43802.33 Da
• Isoelectric Point: 7.8110

>NTDB_id=404389 HWU09_RS04720 WP_237003058.1 1004120..1005295(+) (rarA) [Helicobacter pylori strain AL04]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKNLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=404389 HWU09_RS04720 WP_237003058.1 1004120..1005295(+) (rarA) [Helicobacter pylori strain AL04]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCGCACTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTATTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAAACCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.243	98.977	0.379