Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GFX43_RS07880 Genome accession   NZ_CP046448
Coordinates   1546510..1547256 (+) Length   248 a.a.
NCBI ID   WP_015384274.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541510..1552256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS07865 (GFX43_007865) - 1541737..1541928 (-) 192 WP_003222590.1 hypothetical protein -
  GFX43_RS07870 (GFX43_007870) valS 1542376..1545018 (+) 2643 WP_015483523.1 valine--tRNA ligase -
  GFX43_RS07875 (GFX43_007875) folC 1545078..1546370 (+) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GFX43_RS07880 (GFX43_007880) comC 1546510..1547256 (+) 747 WP_015384274.1 A24 family peptidase Machinery gene
  GFX43_RS07885 (GFX43_007885) spoIIB 1547390..1548388 (+) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  GFX43_RS07890 (GFX43_007890) maf 1548541..1549110 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GFX43_RS07895 (GFX43_007895) radC 1549147..1549842 (+) 696 WP_015384272.1 DNA repair protein RadC -
  GFX43_RS07900 (GFX43_007900) mreB 1549934..1550947 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  GFX43_RS07905 (GFX43_007905) mreC 1550978..1551850 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26378.00 Da        Isoelectric Point: 9.6195

>NTDB_id=404385 GFX43_RS07880 WP_015384274.1 1546510..1547256(+) (comC) [Bacillus subtilis strain ZD01]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHMISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=404385 GFX43_RS07880 WP_015384274.1 1546510..1547256(+) (comC) [Bacillus subtilis strain ZD01]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATATGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGAGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment