Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HWU09_RS03180 Genome accession   NZ_CP058287
Coordinates   661575..663095 (+) Length   506 a.a.
NCBI ID   WP_237003820.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL04     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 656575..668095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU09_RS03150 moaC 656771..657247 (+) 477 WP_237003816.1 cyclic pyranopterin monophosphate synthase MoaC -
  HWU09_RS03155 hpaA 657322..658104 (+) 783 WP_237003817.1 flagellar sheath lipoprotein HpaA -
  HWU09_RS03160 - 658129..658965 (+) 837 WP_237003818.1 outer membrane protein -
  HWU09_RS03165 tig 659077..660432 (+) 1356 WP_237003819.1 trigger factor -
  HWU09_RS03170 clpP 660453..661040 (+) 588 WP_015087136.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HWU09_RS03175 def 661045..661569 (+) 525 WP_165560697.1 peptide deformylase -
  HWU09_RS03180 comM 661575..663095 (+) 1521 WP_237003820.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HWU09_RS03185 - 663120..665180 (+) 2061 WP_237003821.1 heavy metal translocating P-type ATPase -
  HWU09_RS03190 - 665293..667150 (+) 1858 Protein_635 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57179.18 Da        Isoelectric Point: 8.3918

>NTDB_id=404383 HWU09_RS03180 WP_237003820.1 661575..663095(+) (comM) [Helicobacter pylori strain AL04]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREIAQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=404383 HWU09_RS03180 WP_237003820.1 661575..663095(+) (comM) [Helicobacter pylori strain AL04]
ATGATTAATACGATATTTTGCGCAACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGGCAGCGGGTTCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCCAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAG
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCTAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCGCGCAGTATAAAAACCGCTTAAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCACCAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.036

100

0.97
  comM Acinetobacter baylyi ADP1

36.008

100

0.364