Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GFX43_RS03900 Genome accession   NZ_CP046448
Coordinates   757293..757982 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain ZD01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 752293..762982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS03880 (GFX43_003880) tagO 752859..753935 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  GFX43_RS03885 (GFX43_003885) tagV 754008..755183 (-) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GFX43_RS03890 (GFX43_003890) yvyE 755183..755836 (-) 654 WP_003227979.1 YigZ family protein -
  GFX43_RS03895 (GFX43_003895) degS 756053..757210 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GFX43_RS03900 (GFX43_003900) degU 757293..757982 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GFX43_RS03905 (GFX43_003905) fakBA 758080..758925 (+) 846 WP_003227986.1 DegV family protein -
  GFX43_RS03910 (GFX43_003910) comFA 759031..760422 (+) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  GFX43_RS03915 (GFX43_003915) comFB 760482..760778 (+) 297 WP_015483764.1 late competence protein ComFB -
  GFX43_RS03920 (GFX43_003920) comFC 760742..761464 (+) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  GFX43_RS03925 (GFX43_003925) yvyF 761538..761957 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GFX43_RS03930 (GFX43_003930) flgM 762038..762304 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  GFX43_RS03935 (GFX43_003935) flgN 762320..762802 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=404373 GFX43_RS03900 WP_003219701.1 757293..757982(+) (degU) [Bacillus subtilis strain ZD01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=404373 GFX43_RS03900 WP_003219701.1 757293..757982(+) (degU) [Bacillus subtilis strain ZD01]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment