Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWU11_RS05995 Genome accession   NZ_CP058285
Coordinates   1266679..1267224 (-) Length   181 a.a.
NCBI ID   WP_108575834.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1261679..1272224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS05980 - 1262575..1262805 (+) 231 WP_000468322.1 YdcH family protein -
  HWU11_RS05985 babB 1263805..1265931 (-) 2127 WP_237008258.1 Hop family adhesin BabB -
  HWU11_RS05990 rpsR 1266399..1266656 (-) 258 WP_000440196.1 30S ribosomal protein S18 -
  HWU11_RS05995 ssb 1266679..1267224 (-) 546 WP_108575834.1 single-stranded DNA-binding protein Machinery gene
  HWU11_RS06000 rpsF 1267234..1267662 (-) 429 WP_237008259.1 30S ribosomal protein S6 -
  HWU11_RS06005 holA 1267792..1268814 (-) 1023 WP_237008260.1 DNA polymerase III subunit delta -
  HWU11_RS06010 - 1268804..1270738 (-) 1935 WP_237008261.1 RNB domain-containing ribonuclease -
  HWU11_RS06015 - 1270738..1271529 (-) 792 WP_237008262.1 shikimate dehydrogenase -
  HWU11_RS06020 - 1271537..1272127 (-) 591 WP_237008263.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20248.54 Da        Isoelectric Point: 6.2434

>NTDB_id=404358 HWU11_RS05995 WP_108575834.1 1266679..1267224(-) (ssb) [Helicobacter pylori strain BT302]
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSMTHEGFNNAYPTNHNAPSQDPFNQAPSYAQNAYAKENLQA
QPSKYQNSVPEINIDEEEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=404358 HWU11_RS05995 WP_108575834.1 1266679..1267224(-) (ssb) [Helicobacter pylori strain BT302]
ATGTTTAATAAAGTGATTATGGTAGGGCGTTTGACCAGGAATGTGGAGTTGAAATATTTGCCTAGCGGTTCGGCTGCGGC
TACAATAGGTTTAGCCACAAGCAGGCGTTTTAAAAAGCAAGACGGCACGCTAGGCGAAGAGGTGTGCTTTATAGATGCGC
GTTTGTTTGGGCGAACGGCTGAAATCGCTAACCAGTATTTGAGCAAGGGTTCAAGCGTTTTGATAGAAGGGCGTTTGACT
TATGAGAGTTGGATGGATCAAACGGGCAAAAAAAATTCCCGCCACACTATCACAGCGGACTCGTTGCAATTTATGGATAA
AAAGTCAGACAATCCCCAAGCAAACGCTATGCAAGATAGCATGACGCATGAGGGTTTCAACAACGCTTATCCCACTAATC
ATAACGCTCCCAGCCAAGATCCTTTTAACCAAGCCCCAAGTTATGCGCAAAACGCTTACGCTAAAGAGAATTTACAAGCA
CAGCCGTCCAAGTATCAAAACAGCGTGCCTGAAATCAATATTGATGAAGAAGAAATCCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

35.106

100

0.365