Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HWU11_RS05690 Genome accession   NZ_CP058285
Coordinates   1205794..1206843 (+) Length   349 a.a.
NCBI ID   WP_237008234.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200794..1211843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS05670 - 1200900..1201643 (+) 744 WP_001865731.1 carbonic anhydrase -
  HWU11_RS05675 - 1201874..1202965 (-) 1092 Protein_1111 DUF874 family protein -
  HWU11_RS05680 asd 1203377..1204417 (-) 1041 WP_237008949.1 aspartate-semialdehyde dehydrogenase -
  HWU11_RS05685 hisS 1204404..1205732 (-) 1329 WP_237008233.1 histidine--tRNA ligase -
  HWU11_RS05690 waaF 1205794..1206843 (+) 1050 WP_237008234.1 lipopolysaccharide heptosyltransferase II Regulator
  HWU11_RS05695 - 1207036..1207470 (-) 435 WP_000744159.1 hypothetical protein -
  HWU11_RS05700 - 1207794..1208687 (+) 894 Protein_1116 aldo/keto reductase -
  HWU11_RS05705 fusA 1209217..1211295 (-) 2079 WP_237008235.1 elongation factor G -
  HWU11_RS05710 rpsG 1211307..1211774 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39511.21 Da        Isoelectric Point: 9.3446

>NTDB_id=404357 HWU11_RS05690 WP_237008234.1 1205794..1206843(+) (waaF) [Helicobacter pylori strain BT302]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHISNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=404357 HWU11_RS05690 WP_237008234.1 1205794..1206843(+) (waaF) [Helicobacter pylori strain BT302]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATCCGCATCGGCTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTG
AAATTAGCCTTTAACCTCCCCACTCATATCTCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
TGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCTTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGTGGCCCCATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.596

97.994

0.378