Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HWU15_RS03780 Genome accession   NZ_CP058281
Coordinates   803957..805477 (-) Length   506 a.a.
NCBI ID   WP_180586369.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 798957..810477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS03770 - 800559..801836 (-) 1278 WP_237015986.1 restriction endonuclease subunit S -
  HWU15_RS03775 - 801872..803932 (-) 2061 WP_237015987.1 heavy metal translocating P-type ATPase -
  HWU15_RS03780 comM 803957..805477 (-) 1521 WP_180586369.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HWU15_RS03785 def 805483..806007 (-) 525 WP_237015988.1 peptide deformylase -
  HWU15_RS03790 clpP 806012..806599 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HWU15_RS03795 tig 806620..807975 (-) 1356 WP_237015989.1 trigger factor -
  HWU15_RS03800 - 808088..808924 (-) 837 WP_237015990.1 outer membrane protein -
  HWU15_RS03805 hpaA 808950..809732 (-) 783 WP_237015991.1 flagellar sheath lipoprotein HpaA -
  HWU15_RS03810 moaC 809848..810324 (-) 477 WP_096524513.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57205.26 Da        Isoelectric Point: 8.3918

>NTDB_id=404309 HWU15_RS03780 WP_180586369.1 803957..805477(-) (comM) [Helicobacter pylori strain Hk711]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSITKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=404309 HWU15_RS03780 WP_180586369.1 803957..805477(-) (comM) [Helicobacter pylori strain Hk711]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCTGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCACAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATCAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTATAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CACAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAGGTTGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366