Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HWU15_RS02315 Genome accession   NZ_CP058281
Coordinates   466687..467889 (+) Length   400 a.a.
NCBI ID   WP_237015799.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461687..472889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS02300 - 463766..463900 (+) 135 WP_041200005.1 hypothetical protein -
  HWU15_RS02305 - 463893..465026 (+) 1134 WP_237015797.1 VirB8/TrbF family protein -
  HWU15_RS02310 - 465023..466690 (+) 1668 WP_237015798.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HWU15_RS02315 comB10 466687..467889 (+) 1203 WP_237015799.1 DNA type IV secretion system protein ComB10 Machinery gene
  HWU15_RS02320 - 467873..470107 (+) 2235 WP_237015800.1 collagen-like protein -
  HWU15_RS02325 - 470120..471097 (+) 978 WP_237015801.1 hypothetical protein -
  HWU15_RS02330 - 471115..471387 (+) 273 WP_237015802.1 hypothetical protein -
  HWU15_RS02335 - 471390..472334 (+) 945 WP_237015803.1 CpaF/VirB11 family protein -
  HWU15_RS02340 - 472331..472492 (+) 162 Protein_456 replication regulatory RepB family protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44667.34 Da        Isoelectric Point: 9.9651

>NTDB_id=404304 HWU15_RS02315 WP_237015799.1 466687..467889(+) (comB10) [Helicobacter pylori strain Hk711]
MNKSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFIAPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=404304 HWU15_RS02315 WP_237015799.1 466687..467889(+) (comB10) [Helicobacter pylori strain Hk711]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTCGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTGCCCCTAATTTAGACATCTTTATCCCCAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.266

99.5

0.53