Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GMO17_RS21870 Genome accession   NZ_CP046441
Coordinates   4841890..4843230 (+) Length   446 a.a.
NCBI ID   WP_122347869.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. coronafaciens strain B19001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4836890..4848230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMO17_RS21845 (GMO17_22180) pgeF 4837068..4837796 (-) 729 WP_191867871.1 peptidoglycan editing factor PgeF -
  GMO17_RS21850 (GMO17_22185) rluD 4837793..4838755 (-) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GMO17_RS21855 (GMO17_22190) - 4838905..4839927 (+) 1023 WP_005895284.1 outer membrane protein assembly factor BamD -
  GMO17_RS21860 (GMO17_22195) - 4840066..4840305 (+) 240 WP_054997897.1 PP0621 family protein -
  GMO17_RS21865 (GMO17_22200) pilS 4840295..4841887 (+) 1593 WP_024669785.1 two-component system sensor histidine kinase NtrB Regulator
  GMO17_RS21870 (GMO17_22205) pilR 4841890..4843230 (+) 1341 WP_122347869.1 sigma-54-dependent transcriptional regulator Regulator
  GMO17_RS21875 (GMO17_22210) - 4843392..4844009 (+) 618 WP_122347870.1 TetR/AcrR family transcriptional regulator -
  GMO17_RS21880 (GMO17_22215) - 4844091..4845206 (+) 1116 WP_122323612.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49863.94 Da        Isoelectric Point: 6.5800

>NTDB_id=404301 GMO17_RS21870 WP_122347869.1 4841890..4843230(+) (pilR) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQQGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSPPPVRSVDSRLLGESPPMRSLRTQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRNEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEQVVDVRILCATHKDLAVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENAEIHASDLRLAECASSQEQNGPSLADIDNLE
DYLESIERKLILQALEETRWNRTAAADRLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=404301 GMO17_RS21870 WP_122347869.1 4841890..4843230(+) (pilR) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
ATGAGCCAACGGCAAAAGATTCTGATCGTCGACGATGAGCCGGATATTCGTGAGCTCCTGGAGATCACCCTGGGGCGCAT
GAAACTCGATACCCGCAGCGCTCGCAATGTTGCCGAAGCGCACGAATGGCTGGCGCGTGAGCCGTTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAATGGCCTTGAACTGGTGCAGCATATCCAGCAAGGCTACCCGCAGGTGCCCGTGGCA
ATGATCACGGCTCACGGCAACCTCGACACGGCGATCCATGCGCTCAAGGCCGGAGCTTTTGATTTTGTTACCAAACCTGT
CGACCTCAACCGACTGCGTGAGCTGGTCAACAGCGCCCTGAGCCTGCCTTCCAGCCCGCCACCGGTGCGCAGTGTCGACA
GCCGCCTGTTGGGCGAGTCGCCACCGATGCGCAGTCTGCGCACGCAAATCGGCAAGCTGGCACGCAGTCAGGCACCGATC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCGCGACTGATCCATGAACAGGGTCCGCGCAACGAAAAACC
CTTCGTCCCGGTAAACTGCGGTGCCATTCCTTCAGAACTGATGGAAAGCGAATTTTTCGGTCATCGCAAAGGCAGCTTCA
GCGGCGCCCACGAAGACAAACCTGGCCTGTTTCAGGCGGCCCATAACGGTACGTTGTTTCTTGATGAGGTCGCCGACCTG
CCGTTGGCCATGCAGGTAAAGTTGCTGCGGGCGATTCAGGAAAAAGCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAAGT
GGTGGATGTGCGCATCCTGTGCGCCACTCATAAAGACCTGGCTGTAGAGGTCGCCGCAGGCAGGTTTCGTCAGGATCTGT
ATTACCGATTGAATGTGATCGAGCTGCGCGTGCCCTCATTGCGCGAGCGACGTGAGGACATCGACCAGTTGGCAGCCAGT
GTTTTGCGACGACTGGCTGGCAACGGCGCTCAGCCAGTTGCGCGCCTGCACGCGCAGGCGCTGGAAACGCTGAAAAGCTA
TCGATTCCCCGGTAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCATATACCTTGTGTGAAAACGCTGAAATCCATG
CCAGCGACCTGCGTCTGGCCGAATGCGCCAGCTCCCAGGAACAAAATGGCCCGAGCCTGGCCGACATCGACAACCTTGAA
GACTACCTGGAAAGCATCGAGCGGAAACTCATTCTGCAAGCCCTGGAAGAAACCCGCTGGAACCGCACTGCAGCAGCGGA
CAGGCTAAGCCTGTCTTTCAGGTCGCTGCGTTACCGACTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

99.327

0.789
  pilR Acinetobacter baumannii strain A118

49.028

100

0.509

Multiple sequence alignment