Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GMO17_RS17255 Genome accession   NZ_CP046441
Coordinates   3874822..3875538 (-) Length   238 a.a.
NCBI ID   WP_080267902.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. coronafaciens strain B19001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3869822..3880538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMO17_RS17230 (GMO17_17515) murB 3871381..3872400 (-) 1020 WP_122323416.1 UDP-N-acetylmuramate dehydrogenase -
  GMO17_RS17235 (GMO17_17520) kdsB 3872435..3873199 (-) 765 WP_191892653.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GMO17_RS17240 (GMO17_17525) - 3873196..3873381 (-) 186 WP_004884599.1 Trm112 family protein -
  GMO17_RS17245 (GMO17_17530) lpxK 3873399..3874394 (-) 996 WP_122323418.1 tetraacyldisaccharide 4'-kinase -
  GMO17_RS17250 (GMO17_17535) - 3874394..3874825 (-) 432 WP_005892218.1 ExbD/TolR family protein -
  GMO17_RS17255 (GMO17_17540) exbB 3874822..3875538 (-) 717 WP_080267902.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GMO17_RS17260 (GMO17_17545) comA 3875581..3877797 (-) 2217 WP_122323419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GMO17_RS17265 (GMO17_17550) - 3877934..3878722 (-) 789 WP_005892215.1 ABC transporter permease -
  GMO17_RS17270 (GMO17_17555) - 3878719..3879651 (-) 933 WP_005892214.1 ABC transporter ATP-binding protein -
  GMO17_RS17275 (GMO17_17560) - 3879831..3880454 (-) 624 WP_005892213.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25905.46 Da        Isoelectric Point: 7.9112

>NTDB_id=404290 GMO17_RS17255 WP_080267902.1 3874822..3875538(-) (exbB) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
MLEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLTNSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=404290 GMO17_RS17255 WP_080267902.1 3874822..3875538(-) (exbB) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
ATGCTAGAGTGGCGGCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGCGGCTGGATGATGCTGCC
GATCATTTTAAGCTCCATCGCCGCTGTCGGCATCATTATCGAACGCCTGTGGACGCTGCGCGCCAGCCGGATTGCGCCAC
CGCATCTGTTGGGGCAGGCCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAACGAAAAACTCAAGCAACTGCGCGCAGAT
TCGCCGCTGGGCGAGATCCTGGCTGCCGGTCTGACCAACTCCAGGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGA
GGCCGCCGCTCGCGTCATTCATGACCTGGAACGCTACCTGAGCGCACTGGGCTCGATCGCTGCGATGGCGCCTCTGCTCG
GTCTGCTGGGCACAGTATTGGGCATGATCGACATTTTCGGCTCGTTCAACAGCACCGGTGCCACGGCCAATGCCGGTGTG
CTGGCGAGTGGTATTTCCAAGGCGCTTATCTGTACTGCGTCTGGCCTTATCGTTGCGATCCCTGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGTATGGAGCAGCAAGCGATTCGTCTGGTCGAAGTGGTTCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAAATAGACCTCAAATCGCTGGCCAGGGCAGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.143

88.235

0.681

Multiple sequence alignment