Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GMO17_RS03470 Genome accession   NZ_CP046441
Coordinates   782364..783731 (+) Length   455 a.a.
NCBI ID   WP_003381736.1    Uniprot ID   Q0EDX1
Organism   Pseudomonas coronafaciens pv. coronafaciens strain B19001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 777364..788731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMO17_RS03435 (GMO17_03550) cydB 777660..778667 (+) 1008 WP_024671633.1 cytochrome d ubiquinol oxidase subunit II -
  GMO17_RS03440 (GMO17_03555) - 778689..778856 (+) 168 WP_005894301.1 DUF2474 domain-containing protein -
  GMO17_RS03445 (GMO17_03560) - 778951..780075 (-) 1125 WP_053931548.1 methyltransferase -
  GMO17_RS03450 (GMO17_03565) - 780204..780437 (-) 234 WP_005894298.1 response regulator transcription factor -
  GMO17_RS03455 (GMO17_03570) - 780774..781550 (+) 777 WP_122325005.1 ferredoxin--NADP reductase -
  GMO17_RS03460 (GMO17_03575) mscL 781723..782169 (-) 447 WP_005894296.1 large-conductance mechanosensitive channel protein MscL -
  GMO17_RS03465 (GMO17_03580) - 782183..782365 (-) 183 WP_144106539.1 hypothetical protein -
  GMO17_RS03470 (GMO17_03585) radA 782364..783731 (+) 1368 WP_003381736.1 DNA repair protein RadA Machinery gene
  GMO17_RS03475 (GMO17_03590) - 783745..784119 (-) 375 WP_005894295.1 PilZ domain-containing protein -
  GMO17_RS03480 (GMO17_03595) - 784404..786479 (+) 2076 WP_005894294.1 carbon starvation CstA family protein -
  GMO17_RS03485 (GMO17_03600) - 786507..786704 (+) 198 WP_002555232.1 YbdD/YjiX family protein -
  GMO17_RS03490 (GMO17_03605) yjiA 786800..787777 (+) 978 WP_053480175.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48839.40 Da        Isoelectric Point: 7.1315

>NTDB_id=404283 GMO17_RS03470 WP_003381736.1 782364..783731(+) (radA) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=404283 GMO17_RS03470 WP_003381736.1 782364..783731(+) (radA) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGTGGCGCGACGTTTCCCAAGTGGGCGGGCCAGTGCGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATTGAGAGTGGTGCCGCTGCGCCCCCCAGTGGACGCACGGGCTGGACCG
GTTCGCAGGCGCAGATCAGAACCCTGGCAGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCAACTCCGCCGAGCTG
GATCGCGTGCTCGGTGGCGGTCTGGTGGATGGTTCTGTGGTGCTGATCGGCGGCGACCCTGGTATCGGCAAGTCGACGAT
CCTGTTGCAGACGCTGTGCAACATTGCGCAACGCATGCCTGCCCTGTATGTCACTGGTGAGGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGTCTGGGCCTGCCGCAGGACAAACTGCGCGTCATGACCGAAACCTGCATCGAGACGATCATTGCC
ACAGCCAAGGTCGAAAAGCCGAAGGTGATGGTGATCGACTCGATCCAGACGATCTTTACCGAACAGTTGCAATCCGCACC
GGGTGGCGTGTCGCAGGTTCGTGAAAGCGCTGCCTTGCTGGTGCGCTACGCCAAACAAAGCGGCACCGCGATCTTTCTGG
TGGGTCACGTCACCAAGGAAGGCGCGCTGGCCGGTCCACGCGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAGTCGGACGGCCGCCTGCGCCTGTTGCGGGCCGTGAAGAATCGCTTCGGTGCCGTGAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCTTGAAGGAAGTCTCCAATCCGTCGGCGATTTTCCTGACCCGTGCGCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCTACGTGGGAAGGTACGCGACCCATGCTGGTGGAAGTCCAGGCACTGGTGGATGACAGCCACATGTCC
AATCCGCGCCGGGTGACACTGGGGCTCGATCAAAACCGTCTGGCGATGCTATTGGCCGTATTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGTGGCGTGAAGGTGCTCGAGACCGCATCAGACCTGGCCTTGA
TGGCAGCGGTCATGTCCAGTCTGCGCAATAGGCCTCTGCCGCATGACCTGCTGGTGTTTGGCGAAGTGGGGTTGTCGGGT
GAGGTCAGGCCCGTGCCCAGTGGTCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGTTTCAAACGGGCCATCGTGCCGAA
AGGCAATGCGCCGAAAGAAGCACCTCCCGGCTTGCAAATCATTGCTGTCACGCGCCTGGAACAGGCTCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0EDX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment