Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HWU18_RS06035 Genome accession   NZ_CP058252
Coordinates   1283198..1284247 (+) Length   349 a.a.
NCBI ID   WP_237004188.1    Uniprot ID   -
Organism   Helicobacter pylori strain NP05-124     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1278198..1289247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU18_RS06020 - 1279138..1280349 (-) 1212 WP_237004186.1 DUF874 family protein -
  HWU18_RS06025 asd 1280781..1281821 (-) 1041 WP_237004187.1 aspartate-semialdehyde dehydrogenase -
  HWU18_RS06030 hisS 1281808..1283136 (-) 1329 WP_139535119.1 histidine--tRNA ligase -
  HWU18_RS06035 waaF 1283198..1284247 (+) 1050 WP_237004188.1 lipopolysaccharide heptosyltransferase II Regulator
  HWU18_RS06040 - 1284425..1284805 (-) 381 WP_001920034.1 hypothetical protein -
  HWU18_RS06050 fusA 1285398..1287476 (-) 2079 WP_050840148.1 elongation factor G -
  HWU18_RS06055 rpsG 1287488..1287955 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  HWU18_RS06060 rpsL 1287971..1288378 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39489.07 Da        Isoelectric Point: 9.3635

>NTDB_id=404274 HWU18_RS06035 WP_237004188.1 1283198..1284247(+) (waaF) [Helicobacter pylori strain NP05-124]
MSVNASKRMRILLRLPNWLGDGVMASSLFYTLKHHYHNAHFILVGPQITCELFKKDEKIEAVFTDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSIAPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=404274 HWU18_RS06035 WP_237004188.1 1283198..1284247(+) (waaF) [Helicobacter pylori strain NP05-124]
ATGAGCGTAAATGCGTCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCATAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTATTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCGCGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.994

99.14

0.367