Detailed information NTG0404252

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GN309_RS17670
• Genome accession: NZ_CP046428
• Coordinates: 4284381..4285748 (+)
• Length: 455 a.a.
• NCBI ID: WP_007842266.1
• Uniprot ID: A0AAX2R1C6
• Organism: Phocaeicola dorei strain JR05
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4279381..4290748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GN309_RS17660 (GN309_17900)	thrA	4280213..4282645 (-)	2433	WP_008653135.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-
GN309_RS17665 (GN309_17905)	-	4283243..4284124 (-)	882	WP_007836753.1	DUF3078 domain-containing protein	-
GN309_RS17670 (GN309_17910)	radA	4284381..4285748 (+)	1368	WP_007842266.1	DNA repair protein RadA	Machinery gene
GN309_RS17675 (GN309_17915)	-	4285794..4286435 (+)	642	WP_007836750.1	DUF1847 domain-containing protein	-
GN309_RS17680 (GN309_17920)	-	4286450..4288093 (+)	1644	WP_007853255.1	NAD(P)/FAD-dependent oxidoreductase	-
GN309_RS17685 (GN309_17925)	-	4288179..4288703 (-)	525	WP_007836748.1	flavodoxin	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49932.50 Da
• Isoelectric Point: 6.5039

>NTDB_id=404252 GN309_RS17670 WP_007842266.1 4284381..4285748(+) (radA) [Phocaeicola dorei strain JR05]
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEVVRKEPANKRPVSGLEPVKSKPVTLNDITGGDEPRIDMQDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDRKVLYISGEESTRQLKLRADRIPHNSSDCLIVCETSLEQIYIHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKRILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=404252 GN309_RS17670 WP_007842266.1 4284381..4285748(+) (radA) [Phocaeicola dorei strain JR05]
ATGGCAAAGGAAAAAACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAGTTGTACGCAAGGAACCTGCAAATAAAAGACCGGTATCCGGTCTGGAACCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATAACCGGAGGAGACGAGCCTCGAATTGATATGCAAGACGAAGAGCTGAAC
CGGGTATTGGGAGGTGGCTTAGTACCGGGCTCACTCGTTTTACTGGGTGGTGAACCGGGGATAGGCAAATCTACCTTGGT
GTTGCAAACCGTACTTCATCTGCCTGACAGAAAAGTATTGTATATTTCGGGAGAAGAAAGTACACGACAATTAAAACTAC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATCGTCTGTGAAACTTCATTGGAGCAGATTTATATACATATA
AAGAATACACAACCCGATCTCGTCATCATCGACTCTATTCAAACCATCTCCACTGAAACAATAGACTCTTCTCCCGGCAG
TTTAGTACAGGTGCGTGAATGTTCCGCCTCTATTTTGAAATTTGCCAAAGAAACAAATACGCCGGTCATCTTAATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGACCGAAAGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTTCGCAGCATCAAGAACCGTTTCGGAAGCACTGCCGAACTGGGCATTTATGAAATGCG
ACAAAATGGTTTGCGCCAAGTGAGTAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGAATGAGTGGAGTCGCTA
TCGCCTCTGCCATAGAAGGTGTCCGTCCTTTCTTAATTGAAACACAAGCCTTAGTCAGTTCGGCTGTATATGGAAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAATATGCTTCTGGCAGTACTCGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTAAACATTGCGGGTGGATTGAAAGTGAATGATCCGGCCATCGACCTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACAGAGGTAGAACGCGATACCTGCATGGCCGGAGAAGTGGGACTAAGTGGTGAAATC
CGACCTGTAAACCGTATTGAACAGCGAATCGGAGAAGCGGAAAAGTTAGGCTTTAAACGAATCCTTATACCAAAACATAA
TTTACAAGGAATGGATACATCAAAATTGAAAATAGAAATTATTCCGGTCAGAAAAGTGGAAGAAGCATTCCGGGCCTTGT
TTGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (73-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.505	100	0.53
radA	Streptococcus mitis SK321	48.904	100	0.49
radA	Streptococcus pneumoniae Rx1	48.904	100	0.49
radA	Streptococcus pneumoniae D39	48.904	100	0.49
radA	Streptococcus pneumoniae R6	48.904	100	0.49
radA	Streptococcus pneumoniae TIGR4	48.904	100	0.49
radA	Streptococcus mitis NCTC 12261	48.904	100	0.49