Detailed information NTG0404247

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU18_RS00365
• Genome accession: NZ_CP058252
• Coordinates: 70647..71912 (+)
• Length: 421 a.a.
• NCBI ID: WP_050839432.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NP05-124
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 65647..76912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU18_RS00350	-	65802..67844 (+)	2043	WP_237004391.1	type IA DNA topoisomerase	-
HWU18_RS07950	-	67961..68326 (+)	366	WP_240444701.1	hypothetical protein	-
HWU18_RS07955	-	68384..69130 (+)	747	WP_038416864.1	type IV secretion system protein	-
HWU18_RS00360	-	69130..70647 (+)	1518	WP_025276167.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HWU18_RS00365	comB10	70647..71912 (+)	1266	WP_050839432.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU18_RS00370	-	71982..72275 (+)	294	WP_050852683.1	hypothetical protein	-
HWU18_RS00375	-	72268..72531 (+)	264	WP_025276164.1	hypothetical protein	-
HWU18_RS00380	-	72528..72826 (+)	299	Protein_68	hypothetical protein	-
HWU18_RS00385	-	72826..73767 (+)	942	WP_237004392.1	CpaF/VirB11 family protein	-
HWU18_RS00390	-	73764..74219 (+)	456	WP_025276161.1	hypothetical protein	-
HWU18_RS00395	-	74216..74506 (+)	291	WP_000159826.1	hypothetical protein	-
HWU18_RS00400	-	74507..75064 (+)	558	WP_025277016.1	hypothetical protein	-
HWU18_RS00405	-	75065..76792 (+)	1728	WP_237004393.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 47645.97 Da
• Isoelectric Point: 10.1229

>NTDB_id=404247 HWU18_RS00365 WP_050839432.1 70647..71912(+) (comB10) [Helicobacter pylori strain NP05-124]
MGFFRVIRNAPIVSVFIVLMLIFCAWFFLYDDSSPKAVRNYVKSKFPISDYLYKKADKKKIPPQNNVIKQEIKEEEIKKS
CKGQMTDNKGNLIDDDCNIIATQKQVNNLPNLPKDILKTKPTVASNPFNYNTANEEEKTRLVILASRISSQKETQPPTSI
KNSVSNTKSKEKQELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK

Nucleotide

• Length: 1266 bp

>NTDB_id=404247 HWU18_RS00365 WP_050839432.1 70647..71912(+) (comB10) [Helicobacter pylori strain NP05-124]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTGTCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCACCTAAAGCAGTGAGAAATTATGTTAAAAGCAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGCGGATAAAAAGAAGATCCCACCACAGAACAATGTCATTAAACAAGAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATGACAGATAATAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAACTTACCAAACTTACCAAAAGATATACTTAAAACCAAACCTACCGTTGCCTCCAATCCTTTCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGTAGCCAAAAAGAAACGCAGCCTCCAACCTCTATA
AAAAATAGTGTTTCTAATACAAAATCCAAAGAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTT
TAAAAGAAAAAATATAGCGAGCAGTGAAAACAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGA
TCACTCCTATTAGTAGTGAAATAGGGGGGAGTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCCAAAGGGAGTAGAGCCATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAATAGGATCATCACGCCACAAGGGGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATA
ACGGCATGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAACGGG
CTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGA
CTACATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAACAATATTATCGCTCAAATCATGCGAGAGCAAATAA
GGATTAAGCCCATTATCACTATTAGAGAAGGAAGCCATATCTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (202-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	55.137	69.359	0.382