Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GN307_RS15925 Genome accession   NZ_CP046426
Coordinates   3719763..3720227 (-) Length   154 a.a.
NCBI ID   WP_007832113.1    Uniprot ID   A0A076ITT6
Organism   Phocaeicola dorei strain JR03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3714763..3725227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN307_RS15905 (GN307_16050) - 3714772..3715461 (+) 690 WP_007832119.1 response regulator transcription factor -
  GN307_RS15910 (GN307_16055) - 3715480..3717261 (+) 1782 WP_007846292.1 sensor histidine kinase -
  GN307_RS15915 (GN307_16065) - 3717733..3718359 (-) 627 WP_007840064.1 4'-phosphopantetheinyl transferase family protein -
  GN307_RS15920 (GN307_16070) gldE 3718368..3719726 (-) 1359 WP_007840062.1 gliding motility-associated protein GldE -
  GN307_RS15925 (GN307_16075) ssb 3719763..3720227 (-) 465 WP_007832113.1 single-stranded DNA-binding protein Machinery gene
  GN307_RS15930 (GN307_16080) mutY 3720242..3721300 (-) 1059 WP_007840060.1 A/G-specific adenine glycosylase -
  GN307_RS15935 (GN307_16085) - 3721480..3721755 (+) 276 WP_005839749.1 HU family DNA-binding protein -
  GN307_RS15940 (GN307_16090) - 3721994..3723568 (+) 1575 WP_007840057.1 ribonuclease E/G -
  GN307_RS15945 (GN307_16095) - 3723740..3724546 (-) 807 WP_007832110.1 N-acetylmuramoyl-L-alanine amidase -
  GN307_RS15950 (GN307_16100) - 3724553..3725095 (-) 543 WP_007832102.1 TlpA family protein disulfide reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17251.35 Da        Isoelectric Point: 7.0120

>NTDB_id=404233 GN307_RS15925 WP_007832113.1 3719763..3720227(-) (ssb) [Phocaeicola dorei strain JR03]
MSVNKVILIGNVGKDPDVRYLDTGIAVATFSLATTDRAYTLQNGTQVPERTEWHNIVLWRGLAQTAEKYVRKGDKLYIEG
KIRSRSYDDQNGIKRTIVEIFADNMEMLTPRNASQQPGTGYVQAQAVSRQQMSAQVAPQQQQTSDNSLTDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=404233 GN307_RS15925 WP_007832113.1 3719763..3720227(-) (ssb) [Phocaeicola dorei strain JR03]
ATGTCAGTAAATAAAGTCATTTTGATTGGAAATGTAGGAAAGGACCCTGATGTGAGATATTTGGATACCGGCATTGCCGT
TGCCACTTTCTCGTTGGCTACCACCGATCGTGCCTATACGTTGCAGAATGGAACACAGGTTCCCGAACGTACGGAATGGC
ATAATATCGTGTTATGGAGAGGGCTGGCTCAAACTGCGGAAAAATATGTCCGTAAGGGCGACAAACTCTACATAGAAGGA
AAAATCCGTAGCCGTTCATACGATGATCAGAATGGTATAAAACGCACCATTGTCGAGATTTTTGCTGATAATATGGAGAT
GTTGACCCCGCGTAACGCCTCACAGCAACCGGGTACGGGATATGTGCAGGCACAAGCGGTATCCCGGCAGCAGATGTCTG
CACAAGTAGCTCCGCAACAACAGCAAACTTCGGATAATAGCCTGACAGACGATTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A076ITT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

42.045

100

0.481
  ssb Neisseria gonorrhoeae MS11

46.853

92.857

0.435
  ssb Glaesserella parasuis strain SC1401

37.222

100

0.435
  ssb Vibrio cholerae strain A1552

37.931

100

0.429

Multiple sequence alignment