Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HWU19_RS05560 Genome accession   NZ_CP058251
Coordinates   1197110..1198159 (+) Length   349 a.a.
NCBI ID   WP_237016281.1    Uniprot ID   -
Organism   Helicobacter pylori strain UBN18     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192110..1203159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU19_RS05545 - 1192680..1194500 (+) 1821 WP_237016278.1 hypothetical protein -
  HWU19_RS05550 asd 1194693..1195733 (-) 1041 WP_237016279.1 aspartate-semialdehyde dehydrogenase -
  HWU19_RS05555 hisS 1195720..1197048 (-) 1329 WP_237016280.1 histidine--tRNA ligase -
  HWU19_RS05560 waaF 1197110..1198159 (+) 1050 WP_237016281.1 lipopolysaccharide heptosyltransferase II Regulator
  HWU19_RS05565 - 1198359..1198628 (-) 270 WP_237017062.1 flagellar protein -
  HWU19_RS05570 fusA 1199501..1201579 (-) 2079 WP_237016282.1 elongation factor G -
  HWU19_RS05575 rpsG 1201591..1202058 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  HWU19_RS05580 rpsL 1202074..1202481 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39541.30 Da        Isoelectric Point: 9.5762

>NTDB_id=404227 HWU19_RS05560 WP_237016281.1 1197110..1198159(+) (waaF) [Helicobacter pylori strain UBN18]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=404227 HWU19_RS05560 WP_237016281.1 1197110..1198159(+) (waaF) [Helicobacter pylori strain UBN18]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTAGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAGTTGATAGAACGCATCGCCATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCCCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCCCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364