Detailed information NTG0404220

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GN306_RS04675
• Genome accession: NZ_CP046425
• Coordinates: 1170812..1172179 (-)
• Length: 455 a.a.
• NCBI ID: WP_007853253.1
• Uniprot ID: A0A1Y4PH92
• Organism: Phocaeicola dorei strain JR02
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1165812..1177179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GN306_RS04660 (GN306_04735)	-	1167857..1168381 (+)	525	WP_007836748.1	flavodoxin	-
GN306_RS04665 (GN306_04740)	-	1168467..1170110 (-)	1644	WP_007836749.1	NAD(P)/FAD-dependent oxidoreductase	-
GN306_RS04670 (GN306_04745)	-	1170125..1170766 (-)	642	WP_132039818.1	DUF1847 domain-containing protein	-
GN306_RS04675 (GN306_04750)	radA	1170812..1172179 (-)	1368	WP_007853253.1	DNA repair protein RadA	Machinery gene
GN306_RS04680 (GN306_04755)	-	1172436..1173317 (+)	882	WP_007836753.1	DUF3078 domain-containing protein	-
GN306_RS04685 (GN306_04760)	thrA	1173915..1176347 (+)	2433	WP_022185657.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49902.48 Da
• Isoelectric Point: 6.5039

>NTDB_id=404220 GN306_RS04675 WP_007853253.1 1170812..1172179(-) (radA) [Phocaeicola dorei strain JR02]
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEVVRKEPANKRPVSGLEPVKSKPVTLNDITGGDEPRIDMQDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDRKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYIHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKRILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=404220 GN306_RS04675 WP_007853253.1 1170812..1172179(-) (radA) [Phocaeicola dorei strain JR02]
ATGGCAAAGGAAAAAACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAGTTGTACGCAAGGAACCTGCAAATAAAAGACCGGTATCCGGTCTGGAACCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATAACCGGAGGAGACGAGCCTCGAATTGATATGCAAGACGAAGAGCTGAAC
CGGGTATTGGGAGGTGGCTTAGTACCGGGCTCACTCGTTTTACTGGGTGGTGAACCGGGGATAGGCAAATCTACCTTGGT
GTTGCAAACCGTACTTCATCTGCCTGACAGAAAAGTATTGTATATTTCGGGAGAAGAAAGTGCACGACAATTAAAACTAC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATCGTCTGTGAAACTTCATTGGAGCAGATTTATATACATATA
AAGAATACACAACCCGATCTCGTCATCATCGACTCTATTCAAACCATCTCCACTGAAACAATAGACTCTTCTCCCGGCAG
TTTAGTACAGGTGCGTGAATGTTCCGCCTCTATTTTGAAATTTGCCAAAGAAACAAATACGCCGGTCATCTTAATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGACCGAAAGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTTCGCAGCATCAAGAACCGTTTCGGAAGCACTGCCGAACTGGGCATTTATGAAATGCG
ACAAAATGGTTTGCGCCAAGTGAGTAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGAATGAGTGGAGTCGCTA
TCGCCTCTGCCATAGAAGGTGTCCGTCCTTTCTTAATTGAAACACAAGCCCTAGTCAGTTCGGCAGTATATGGAAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAATATGCTTCTGGCAGTACTCGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTAAACATTGCGGGTGGATTGAAAGTGAATGATCCGGCCATCGACTTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACAGAGGTAGAACGCGATACCTGCATGGCCGGAGAAGTGGGACTAAGTGGTGAAATC
CGACCTGTAAACCGTATTGAACAGCGAATCGGAGAAGCGGAAAAGTTAGGCTTTAAACGAATCCTTATACCAAAACATAA
TTTACAAGGAATGGATACATCAAAATTGAAAATAGAAATTATTCCGGTCAGAAAAGTGGAAGAAGCATTCCGGGCCTTGT
TTGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (73-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

3D structure

• AlphaFold DB: A0A1Y4PH92

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.505	100	0.53
radA	Streptococcus mitis SK321	49.123	100	0.492
radA	Streptococcus pneumoniae Rx1	49.123	100	0.492
radA	Streptococcus pneumoniae D39	49.123	100	0.492
radA	Streptococcus pneumoniae R6	49.123	100	0.492
radA	Streptococcus pneumoniae TIGR4	49.123	100	0.492
radA	Streptococcus mitis NCTC 12261	49.123	100	0.492