Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HWI84_RS05515 Genome accession   NZ_CP058250
Coordinates   1176082..1177128 (+) Length   348 a.a.
NCBI ID   WP_237012892.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL02     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171082..1182128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS05500 - 1171671..1173491 (+) 1821 WP_237012889.1 hypothetical protein -
  HWI84_RS05505 asd 1173665..1174705 (-) 1041 WP_237012890.1 aspartate-semialdehyde dehydrogenase -
  HWI84_RS05510 hisS 1174692..1176020 (-) 1329 WP_237012891.1 histidine--tRNA ligase -
  HWI84_RS05515 waaF 1176082..1177128 (+) 1047 WP_237012892.1 lipopolysaccharide heptosyltransferase II Regulator
  HWI84_RS05520 - 1177260..1177637 (-) 378 WP_237012893.1 flagellar protein -
  HWI84_RS05525 fusA 1178155..1180233 (-) 2079 WP_015643837.1 elongation factor G -
  HWI84_RS05530 rpsG 1180245..1180712 (-) 468 WP_237012894.1 30S ribosomal protein S7 -
  HWI84_RS05535 rpsL 1180728..1181135 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 39491.36 Da        Isoelectric Point: 9.7445

>NTDB_id=404187 HWI84_RS05515 WP_237012892.1 1176082..1177128(+) (waaF) [Helicobacter pylori strain AL02]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCAKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLET

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=404187 HWI84_RS05515 WP_237012892.1 1176082..1177128(+) (waaF) [Helicobacter pylori strain AL02]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTAGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGTTAGCCACCCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTATTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAATTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGCGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACACCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AACTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.243

97.989

0.365