Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   HWI84_RS01840 Genome accession   NZ_CP058250
Coordinates   383166..383540 (-) Length   124 a.a.
NCBI ID   WP_015086992.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL02     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 378166..388540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS01820 pssA 379316..380029 (-) 714 WP_015086989.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  HWI84_RS01825 - 380019..380267 (-) 249 WP_237013346.1 hypothetical protein -
  HWI84_RS01830 ftsH 380270..382168 (-) 1899 WP_187859838.1 ATP-dependent zinc metalloprotease FtsH -
  HWI84_RS01835 prmA 382182..383165 (-) 984 WP_419772998.1 50S ribosomal protein L11 methyltransferase -
  HWI84_RS01840 chpA 383166..383540 (-) 375 WP_015086992.1 chemotaxis response regulator CheY Regulator
  HWI84_RS01845 - 383830..384432 (+) 603 WP_237003079.1 outer membrane protein -
  HWI84_RS01855 - 384564..384971 (-) 408 WP_187908353.1 hypothetical protein -
  HWI84_RS01860 - 384974..385216 (-) 243 WP_029649570.1 PP0621 family protein -
  HWI84_RS01865 rsmG 385210..385746 (-) 537 WP_015086996.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HWI84_RS01870 queA 385743..386780 (-) 1038 WP_237013347.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HWI84_RS01875 tatC 386777..387529 (-) 753 WP_237013348.1 twin-arginine translocase subunit TatC -
  HWI84_RS01880 tatB 387522..388004 (-) 483 WP_237013349.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13833.13 Da        Isoelectric Point: 4.6381

>NTDB_id=404173 HWI84_RS01840 WP_015086992.1 383166..383540(-) (chpA) [Helicobacter pylori strain AL02]
MKLLVVDDSSTMRRIIGNTLSRLGYEDILEAEHGVEALEKLNANPDIKVLITDWNMPEMNGLDLVIKVRADERFKEIPII
MITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND

Nucleotide


Download         Length: 375 bp        

>NTDB_id=404173 HWI84_RS01840 WP_015086992.1 383166..383540(-) (chpA) [Helicobacter pylori strain AL02]
TTGAAACTACTGGTAGTAGATGATAGCTCAACTATGAGAAGAATTATTGGAAACACACTTTCACGCTTAGGCTATGAAGA
TATTTTAGAAGCTGAGCATGGGGTGGAAGCTTTGGAGAAACTAAACGCTAATCCGGACATTAAGGTGCTTATCACAGATT
GGAACATGCCTGAAATGAACGGCTTGGATCTCGTTATAAAGGTGCGTGCGGATGAGCGCTTTAAAGAAATCCCTATCATT
ATGATCACCACAGAGGGCGGTAAGGCTGAGGTCATTACGGCTTTGAAAGCGGGCGTGAATAATTATATTGTGAAGCCTTT
TACCCCCCAGGTTTTGAAAGAAAAATTAGAGGTTGTTTTAGGGACAAACGATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

37.815

95.968

0.363