Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GM160_RS02595 Genome accession   NZ_CP046415
Coordinates   570206..571588 (-) Length   460 a.a.
NCBI ID   WP_156227902.1    Uniprot ID   A0A6I6D1X1
Organism   Guyparkeria halophila strain sp2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565206..576588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM160_RS02570 (GM160_02570) folE2 565383..566171 (-) 789 WP_156227894.1 GTP cyclohydrolase FolE2 -
  GM160_RS02575 (GM160_02575) queD 566271..566672 (-) 402 WP_136867071.1 6-carboxytetrahydropterin synthase QueD -
  GM160_RS02580 (GM160_02580) dxs 566936..568855 (-) 1920 WP_156227896.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GM160_RS02585 (GM160_02585) - 568855..569763 (-) 909 WP_419664702.1 polyprenyl synthetase family protein -
  GM160_RS02590 (GM160_02590) - 569844..570125 (-) 282 WP_156227900.1 exodeoxyribonuclease VII small subunit -
  GM160_RS02595 (GM160_02595) radA 570206..571588 (-) 1383 WP_156227902.1 DNA repair protein RadA Machinery gene
  GM160_RS02600 (GM160_02600) - 571595..572869 (-) 1275 WP_136867066.1 HlyC/CorC family transporter -
  GM160_RS02605 (GM160_02605) - 573042..573863 (-) 822 WP_169303614.1 cytochrome C assembly family protein -
  GM160_RS02610 (GM160_02610) - 574148..575551 (-) 1404 WP_156227904.1 FAD-binding oxidoreductase -
  GM160_RS02615 (GM160_02615) - 575557..576120 (-) 564 WP_136867063.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48794.16 Da        Isoelectric Point: 6.7203

>NTDB_id=404172 GM160_RS02595 WP_156227902.1 570206..571588(-) (radA) [Guyparkeria halophila strain sp2]
MAKKSQTAFVCRECGADHPKWAGRCSECGAWNSLAEMRLPGGKSPAREVAGYAGEAPRITAIGEVEVSDTPRESSGLGEL
DRVLGGGLVPGSVVLLGGDPGIGKSTLLLQTVLGLQDRIECLYVTGEESLQQVALRGRRLGTDLAGRAGELTLLSETRIE
SILAACSKSLPGLMVVDSIQTLYTEELSAAPGSVSQLREATAQLVRFAKRHDVIVLIVGHVTKEGALAGPRVLEHMVDTV
LYFEGDPGARFRVIRAVKNRFGAANEVGVFGMTDHGLKPVSNPSAIFLSRHEKPVPGSVVMVTREGTRPMLVEVQALVAD
HPGGGSRRLTVGLDQNRLAMLLAVLHRHGQVALFDQDVFLNVVGGVRVNETAADLASLIAMLSSFRDRPLPQGLVIFGEV
GLAGEIRPVPGGPERLTEAAKHGFTRAIVPRGNKPPKPIDGLEVIAVAHLDEAIEAVDTF

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=404172 GM160_RS02595 WP_156227902.1 570206..571588(-) (radA) [Guyparkeria halophila strain sp2]
ATGGCGAAGAAGAGCCAGACCGCCTTCGTCTGCCGCGAGTGCGGTGCCGACCACCCCAAGTGGGCCGGCCGCTGCAGCGA
GTGCGGCGCCTGGAACAGCCTCGCCGAGATGCGCCTGCCGGGCGGCAAGTCACCCGCCCGCGAGGTGGCCGGCTACGCCG
GCGAGGCGCCGCGTATCACCGCCATCGGCGAGGTGGAGGTCTCCGACACCCCGCGCGAGTCCAGCGGCCTGGGCGAACTC
GACCGTGTGCTCGGCGGCGGGCTGGTGCCCGGCTCGGTGGTGCTGCTCGGCGGCGACCCGGGCATCGGCAAGTCCACCCT
GCTCCTGCAGACGGTGCTCGGCCTGCAGGACCGCATCGAATGCCTGTACGTCACCGGCGAGGAATCCCTGCAGCAGGTCG
CCCTGCGCGGTCGGCGGCTGGGCACGGACCTGGCCGGGCGGGCCGGCGAATTGACCCTGCTCTCCGAGACACGCATCGAG
TCGATCCTCGCGGCCTGCTCGAAATCCCTGCCGGGGCTGATGGTGGTCGACTCGATCCAGACGCTCTACACCGAGGAACT
CTCGGCCGCGCCGGGTTCGGTCTCGCAGCTCAGGGAGGCGACCGCCCAGCTGGTGCGCTTTGCCAAGCGCCATGACGTGA
TCGTGCTGATCGTCGGGCACGTGACCAAGGAAGGGGCGCTGGCCGGTCCGCGCGTGCTCGAGCACATGGTCGACACGGTG
CTCTACTTCGAGGGCGACCCCGGCGCACGCTTTCGCGTCATCCGCGCGGTCAAGAACCGCTTCGGCGCGGCCAACGAGGT
GGGCGTGTTCGGCATGACCGATCACGGCCTGAAACCCGTCTCCAATCCCTCGGCCATCTTCCTTTCCCGCCACGAGAAGC
CGGTCCCCGGCAGCGTGGTGATGGTCACCCGCGAGGGCACCCGCCCGATGCTGGTCGAGGTCCAGGCGCTGGTGGCCGAC
CACCCCGGCGGCGGCTCGCGCCGGCTGACCGTCGGGCTCGACCAGAACCGCCTGGCGATGCTGCTCGCCGTGCTGCACCG
TCACGGCCAGGTCGCCTTGTTCGACCAGGACGTGTTCCTCAACGTGGTCGGCGGCGTGCGTGTCAACGAGACCGCCGCGG
ATCTCGCCAGCCTGATCGCCATGCTCTCGAGCTTCCGCGACCGCCCCCTGCCGCAGGGGCTGGTGATCTTCGGCGAGGTG
GGCCTGGCCGGCGAAATCCGCCCGGTTCCCGGCGGCCCGGAACGACTGACCGAGGCGGCCAAGCACGGCTTTACCCGCGC
GATCGTCCCAAGGGGCAACAAGCCGCCCAAGCCGATCGACGGGCTCGAGGTCATCGCCGTGGCCCACCTCGACGAGGCGA
TCGAGGCCGTCGACACGTTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-225)

Subunit ChlI of Mg-chelatase (ChlI)

(355-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6D1X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.348

0.48
  radA Streptococcus mitis NCTC 12261

47.289

100

0.474
  radA Streptococcus mitis SK321

47.289

100

0.474
  radA Streptococcus pneumoniae Rx1

47.289

100

0.474
  radA Streptococcus pneumoniae D39

47.289

100

0.474
  radA Streptococcus pneumoniae R6

47.289

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.289

100

0.474

Multiple sequence alignment