Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GNY17_RS14840 Genome accession   NZ_CP046411
Coordinates   2893062..2893586 (+) Length   174 a.a.
NCBI ID   WP_025792841.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2888062..2898586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS14830 (GNY17_14830) gshA 2890797..2892365 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  GNY17_RS14835 (GNY17_14835) - 2892390..2892995 (+) 606 WP_023624249.1 hypothetical protein -
  GNY17_RS14840 (GNY17_14840) luxS 2893062..2893586 (+) 525 WP_025792841.1 S-ribosylhomocysteine lyase Regulator
  GNY17_RS14845 (GNY17_14845) - 2893648..2894928 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  GNY17_RS14850 (GNY17_14850) - 2895054..2895848 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GNY17_RS14855 (GNY17_14855) ffh 2896061..2897443 (+) 1383 WP_015297255.1 signal recognition particle protein -
  GNY17_RS14860 (GNY17_14860) rpsP 2897653..2897901 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GNY17_RS14865 (GNY17_14865) rimM 2897930..2898478 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19247.96 Da        Isoelectric Point: 4.6153

>NTDB_id=404153 GNY17_RS14840 WP_025792841.1 2893062..2893586(+) (luxS) [Vibrio parahaemolyticus strain 19-021-D1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVDVD

Nucleotide


Download         Length: 525 bp        

>NTDB_id=404153 GNY17_RS14840 WP_025792841.1 2893062..2893586(+) (luxS) [Vibrio parahaemolyticus strain 19-021-D1]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

98.276

0.874

Multiple sequence alignment