Detailed information NTG0404150

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GNY17_RS14710
• Genome accession: NZ_CP046411
• Coordinates: 2870476..2871465 (+)
• Length: 329 a.a.
• NCBI ID: WP_025792827.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 19-021-D1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2865476..2876465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNY17_RS14675 (GNY17_14675)	ftsB	2865484..2865765 (+)	282	WP_005455577.1	cell division protein FtsB	-
GNY17_RS14680 (GNY17_14680)	ispD	2865767..2866471 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GNY17_RS14685 (GNY17_14685)	ispF	2866489..2866965 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GNY17_RS14690 (GNY17_14690)	truD	2867012..2868055 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
GNY17_RS14695 (GNY17_14695)	surE	2868055..2868831 (+)	777	WP_025792825.1	5'/3'-nucleotidase SurE	-
GNY17_RS14700 (GNY17_14700)	-	2868831..2869457 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GNY17_RS14705 (GNY17_14705)	-	2869472..2870395 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GNY17_RS14710 (GNY17_14710)	rpoS	2870476..2871465 (+)	990	WP_025792827.1	RNA polymerase sigma factor RpoS	Regulator
GNY17_RS14715 (GNY17_14715)	mutS	2871544..2874105 (-)	2562	WP_025792829.1	DNA mismatch repair protein MutS	-
GNY17_RS14720 (GNY17_14720)	pncC	2874190..2874672 (+)	483	WP_025554256.1	nicotinamide-nucleotide amidase	-
GNY17_RS14725 (GNY17_14725)	recA	2874873..2875916 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37546.35 Da
• Isoelectric Point: 4.6096

>NTDB_id=404150 GNY17_RS14710 WP_025792827.1 2870476..2871465(+) (rpoS) [Vibrio parahaemolyticus strain 19-021-D1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLVHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=404150 GNY17_RS14710 WP_025792827.1 2870476..2871465(+) (rpoS) [Vibrio parahaemolyticus strain 19-021-D1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTGCTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACTTGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGATGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGGTCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGGTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851