Detailed information NTG0404131

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GNY17_RS09935
• Genome accession: NZ_CP046411
• Coordinates: 1933039..1934085 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 19-021-D1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1928039..1939085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNY17_RS09910 (GNY17_09905)	rplC	1928612..1929241 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GNY17_RS09915 (GNY17_09910)	rpsJ	1929256..1929567 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GNY17_RS09920 (GNY17_09915)	rpmE	1930025..1930246 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GNY17_RS09930 (GNY17_09925)	priA	1930541..1932745 (+)	2205	WP_029824531.1	primosomal protein N'	-
GNY17_RS09935 (GNY17_09930)	cytR	1933039..1934085 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
GNY17_RS09940 (GNY17_09935)	ftsN	1934262..1934807 (+)	546	WP_005481405.1	cell division protein FtsN	-
GNY17_RS09945 (GNY17_09940)	hslV	1934972..1935523 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GNY17_RS09950 (GNY17_09945)	hslU	1935547..1936878 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GNY17_RS09955 (GNY17_09950)	-	1937302..1937526 (-)	225	WP_005489715.1	hypothetical protein	-
GNY17_RS09960 (GNY17_09955)	-	1937686..1937835 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
GNY17_RS09965 (GNY17_09960)	radC	1938006..1938479 (+)	474	WP_025792561.1	RadC family protein	-
GNY17_RS09970 (GNY17_09965)	-	1938476..1938907 (+)	432	WP_017633432.1	DUF2787 family protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=404131 GNY17_RS09935 WP_254894148.1 1933039..1934085(+) (cytR) [Vibrio parahaemolyticus strain 19-021-D1]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=404131 GNY17_RS09935 WP_254894148.1 1933039..1934085(+) (cytR) [Vibrio parahaemolyticus strain 19-021-D1]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871