Detailed information NTG0403931

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: GD442_RS25340
• Genome accession: NZ_CP046398
• Coordinates: 4969561..4970910 (-)
• Length: 449 a.a.
• NCBI ID: WP_000879430.1
• Uniprot ID: -
• Organism: Bacillus sp. A260
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4964561..4975910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GD442_RS25320 (GD442_25330)	secA	4964886..4967393 (-)	2508	WP_000579385.1	preprotein translocase subunit SecA	-
GD442_RS25325 (GD442_25335)	raiA	4967668..4968210 (-)	543	WP_000671185.1	ribosome-associated translation inhibitor RaiA	-
GD442_RS25330 (GD442_25340)	cspC	4968533..4968730 (-)	198	WP_001990088.1	cold shock protein CspC	-
GD442_RS25335 (GD442_25345)	-	4968857..4969561 (-)	705	WP_002183001.1	ComF family protein	-
GD442_RS25340 (GD442_25350)	comFA	4969561..4970910 (-)	1350	WP_000879430.1	ATP-dependent helicase ComFA	Machinery gene
GD442_RS25345 (GD442_25355)	-	4971037..4972482 (-)	1446	WP_159365227.1	C40 family peptidase	-
GD442_RS25350 (GD442_25360)	-	4972643..4972957 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
GD442_RS25355 (GD442_25365)	-	4973130..4973972 (-)	843	WP_000684725.1	DegV family protein	-
GD442_RS25360 (GD442_25370)	-	4974209..4974844 (+)	636	WP_000926672.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51062.89 Da
• Isoelectric Point: 9.8494

>NTDB_id=403931 GD442_RS25340 WP_000879430.1 4969561..4970910(-) (comFA) [Bacillus sp. A260]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRWLFASFLCKRCSKVCTYCRKCIAMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNHERIPRVLLQWLKMYLNKKYPVFL
FVPHIRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=403931 GD442_RS25340 WP_000879430.1 4969561..4970910(-) (comFA) [Bacillus sp. A260]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAACGTAGATCGGTGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAGCGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCATGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATATACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (107-254)

• Helicase conserved C-terminal domain (Helicase_C) (313-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.131	98.441	0.503