Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GD442_RS21075 Genome accession   NZ_CP046398
Coordinates   4153131..4153877 (-) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus sp. A260     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4148131..4158877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS21060 (GD442_21065) dnaG 4148892..4150688 (-) 1797 WP_000528221.1 DNA primase -
  GD442_RS27865 - 4150770..4150913 (-) 144 WP_000479733.1 hypothetical protein -
  GD442_RS21065 (GD442_21070) - 4151549..4152361 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  GD442_RS21070 (GD442_21075) - 4152391..4153023 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  GD442_RS21075 (GD442_21080) recO 4153131..4153877 (-) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  GD442_RS21080 (GD442_21085) - 4153911..4154054 (-) 144 WP_000883924.1 YqzL family protein -
  GD442_RS21085 (GD442_21090) era 4154231..4155136 (-) 906 WP_001080230.1 GTPase Era -
  GD442_RS21090 (GD442_21095) - 4155129..4155527 (-) 399 WP_001086283.1 cytidine deaminase -
  GD442_RS21095 (GD442_21100) - 4155627..4155980 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  GD442_RS21100 (GD442_21105) ybeY 4155977..4156447 (-) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  GD442_RS21105 (GD442_21110) - 4156444..4158588 (-) 2145 WP_000091510.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=403921 GD442_RS21075 WP_000487009.1 4153131..4153877(-) (recO) [Bacillus sp. A260]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=403921 GD442_RS21075 WP_000487009.1 4153131..4153877(-) (recO) [Bacillus sp. A260]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment