Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GD442_RS20140 Genome accession   NZ_CP046398
Coordinates   4003946..4004740 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus sp. A260     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3998946..4009740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS20115 (GD442_20120) - 3999469..4001541 (-) 2073 WP_098213763.1 sigma-54-dependent Fis family transcriptional regulator -
  GD442_RS20120 (GD442_20125) - 4001679..4001912 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  GD442_RS20125 (GD442_20130) - 4001962..4002690 (-) 729 WP_000172575.1 glycerophosphodiester phosphodiesterase -
  GD442_RS20130 (GD442_20135) - 4002741..4002887 (+) 147 WP_001247671.1 YycC family protein -
  GD442_RS20135 (GD442_20140) - 4003130..4003693 (-) 564 WP_000428229.1 PRK06770 family protein -
  GD442_RS20140 (GD442_20145) spo0A 4003946..4004740 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  GD442_RS20145 (GD442_20150) spoIVB 4005031..4006329 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  GD442_RS20150 (GD442_20155) recN 4006448..4008187 (-) 1740 WP_000947768.1 DNA repair protein RecN Machinery gene
  GD442_RS20155 (GD442_20160) argR 4008452..4008901 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=403917 GD442_RS20140 WP_011110369.1 4003946..4004740(-) (spo0A) [Bacillus sp. A260]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=403917 GD442_RS20140 WP_011110369.1 4003946..4004740(-) (spo0A) [Bacillus sp. A260]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment