Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GD442_RS10290 Genome accession   NZ_CP046398
Coordinates   2007207..2007542 (+) Length   111 a.a.
NCBI ID   WP_000982017.1    Uniprot ID   A0A9W5L6E7
Organism   Bacillus sp. A260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2002207..2012542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS10265 (GD442_10270) - 2002402..2003229 (-) 828 WP_000499733.1 hypothetical protein -
  GD442_RS10270 (GD442_10275) - 2003339..2003986 (+) 648 WP_000165965.1 HD domain-containing protein -
  GD442_RS10275 (GD442_10280) - 2003983..2005878 (+) 1896 WP_000783169.1 ABC-F family ATP-binding cassette domain-containing protein -
  GD442_RS10280 (GD442_10285) - 2005954..2006685 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  GD442_RS10285 (GD442_10290) - 2006791..2007045 (+) 255 WP_000975138.1 DUF4318 domain-containing protein -
  GD442_RS10290 (GD442_10295) ssbA 2007207..2007542 (+) 336 WP_000982017.1 single-stranded DNA-binding protein Machinery gene
  GD442_RS10295 (GD442_10300) - 2007791..2008918 (+) 1128 WP_000692564.1 conserved virulence factor C family protein -
  GD442_RS10300 (GD442_10305) - 2008922..2009305 (+) 384 WP_000634884.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  GD442_RS10305 (GD442_10310) - 2009389..2009823 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  GD442_RS10310 (GD442_10315) - 2009873..2010649 (+) 777 WP_000637455.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12797.69 Da        Isoelectric Point: 9.4344

>NTDB_id=403909 GD442_RS10290 WP_000982017.1 2007207..2007542(+) (ssbA) [Bacillus sp. A260]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAL

Nucleotide


Download         Length: 336 bp        

>NTDB_id=403909 GD442_RS10290 WP_000982017.1 2007207..2007542(+) (ssbA) [Bacillus sp. A260]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAGGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATTGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.351

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.455

99.099

0.45
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.144

100

0.441
  ssbA Streptococcus mutans UA159

39.64

100

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

39.64

100

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.64

100

0.396
  ssbB/cilA Streptococcus pneumoniae D39

38.739

100

0.387
  ssbB/cilA Streptococcus pneumoniae R6

38.739

100

0.387
  ssbB/cilA Streptococcus mitis SK321

38.739

100

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

38.739

100

0.387

Multiple sequence alignment