Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GD442_RS09420 Genome accession   NZ_CP046398
Coordinates   1844361..1844648 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus sp. A260     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839361..1849648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS09400 (GD442_09405) - 1840535..1840732 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  GD442_RS09405 (GD442_09410) - 1840764..1841225 (+) 462 WP_000024992.1 NUDIX hydrolase -
  GD442_RS09410 (GD442_09415) nadE 1841275..1842093 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  GD442_RS09415 (GD442_09420) - 1842364..1844244 (+) 1881 WP_001026005.1 FtsX-like permease family protein -
  GD442_RS09420 (GD442_09425) abrB 1844361..1844648 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GD442_RS09425 (GD442_09430) - 1844924..1845871 (+) 948 WP_000099762.1 serine protease -
  GD442_RS09430 (GD442_09435) - 1845913..1846260 (+) 348 Protein_1803 MFS transporter -
  GD442_RS28365 (GD442_09440) - 1846309..1846515 (+) 207 WP_001101741.1 hypothetical protein -
  GD442_RS09440 (GD442_09445) - 1846659..1847021 (+) 363 WP_159365081.1 DUF805 domain-containing protein -
  GD442_RS09445 (GD442_09450) - 1847221..1847445 (-) 225 WP_000162602.1 hypothetical protein -
  GD442_RS09450 (GD442_09455) - 1847530..1847877 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  GD442_RS09455 (GD442_09460) - 1848074..1848601 (+) 528 WP_000690662.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=403908 GD442_RS09420 WP_000648324.1 1844361..1844648(+) (abrB) [Bacillus sp. A260]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=403908 GD442_RS09420 WP_000648324.1 1844361..1844648(+) (abrB) [Bacillus sp. A260]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment