Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GD442_RS07565 Genome accession   NZ_CP046398
Coordinates   1468906..1469508 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus sp. A260     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1463906..1474508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS07545 (GD442_07550) dnaD 1464227..1464934 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  GD442_RS07550 (GD442_07555) nth 1464950..1465597 (+) 648 WP_000933030.1 endonuclease III -
  GD442_RS07555 (GD442_07560) - 1465601..1466119 (+) 519 WP_000442646.1 YpoC family protein -
  GD442_RS07560 (GD442_07565) - 1466146..1468839 (-) 2694 WP_001283092.1 PBP1A family penicillin-binding protein -
  GD442_RS07565 (GD442_07570) recU 1468906..1469508 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  GD442_RS07570 (GD442_07575) - 1469612..1470637 (+) 1026 WP_000495659.1 DUF2515 domain-containing protein -
  GD442_RS28360 - 1470789..1470968 (-) 180 WP_001987054.1 hypothetical protein -
  GD442_RS07575 (GD442_07580) - 1471054..1471296 (+) 243 WP_001252036.1 hypothetical protein -
  GD442_RS07580 (GD442_07585) - 1471312..1471656 (+) 345 WP_000786939.1 YppE family protein -
  GD442_RS07585 (GD442_07590) - 1471683..1471874 (-) 192 WP_000242652.1 YppF family protein -
  GD442_RS07590 (GD442_07595) - 1472052..1472618 (+) 567 WP_000487608.1 YppG family protein -
  GD442_RS07595 (GD442_07600) - 1472774..1473205 (+) 432 WP_000546272.1 CotD family spore coat protein -
  GD442_RS07600 (GD442_07605) - 1473262..1473816 (+) 555 WP_000862908.1 DUF1273 domain-containing protein -
  GD442_RS07605 (GD442_07610) gpsB 1473914..1474249 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=403907 GD442_RS07565 WP_000155598.1 1468906..1469508(-) (recU) [Bacillus sp. A260]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=403907 GD442_RS07565 WP_000155598.1 1468906..1469508(-) (recU) [Bacillus sp. A260]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment