Detailed information NTG0403880

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FOC41_RS14035
• Genome accession: NZ_CP046397
• Coordinates: 3369380..3370747 (+)
• Length: 455 a.a.
• NCBI ID: WP_004306409.1
• Uniprot ID: -
• Organism: Bacteroides ovatus strain FDAARGOS_733
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3364380..3375747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOC41_RS14025 (FOC41_14025)	thrA	3365419..3367854 (-)	2436	WP_004299126.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-
FOC41_RS14030 (FOC41_14030)	-	3368256..3369293 (+)	1038	WP_004306410.1	asparaginase	-
FOC41_RS14035 (FOC41_14035)	radA	3369380..3370747 (+)	1368	WP_004306409.1	DNA repair protein RadA	Machinery gene
FOC41_RS14040 (FOC41_14040)	-	3370814..3372466 (+)	1653	WP_004306408.1	NAD(P)/FAD-dependent oxidoreductase	-
FOC41_RS14045 (FOC41_14045)	-	3372483..3373085 (+)	603	WP_004306407.1	response regulator transcription factor	-
FOC41_RS14050 (FOC41_14050)	-	3373176..3375638 (+)	2463	WP_004306406.1	TonB-dependent receptor	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50130.70 Da
• Isoelectric Point: 5.7345

>NTDB_id=403880 FOC41_RS14035 WP_004306409.1 3369380..3370747(+) (radA) [Bacteroides ovatus strain FDAARGOS_733]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRAERLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=403880 FOC41_RS14035 WP_004306409.1 3369380..3370747(+) (radA) [Bacteroides ovatus strain FDAARGOS_733]
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCGAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAAGAAATCGTACGGAAAGAACCCACTAACCGCCGTCCGGTATCGGGCATTGAAACAC
AAAAGCCCAAGCCACTGGCACTTAGCGATATAGAGGCAGACGACGAGCCACGCATCAATATGCACGATGATGAACTGAAT
CGTGTATTGGGAGGCGGACTTGTACAGGGTTCTCTTGTCCTGATAGGCGGCGAGCCGGGAATCGGTAAATCGACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAGATTCTTTATGTATCCGGTGAAGAGAGTGCACGACAGCTGAAACTTC
GTGCCGAACGTCTCTCTGACACTTCCAGCGATTGCCTGATCGTTTGCGAGACTTCACTCGAACAGATTTATGTGCATATC
AAGAATACGAATCCCGATTTAGTGATTATCGACTCTATACAGACTATTTCCACCGAAAGTATCGAATCGTCTCCCGGAAG
TATAGCGCAAGTCAGAGAGTGTTCGGCGTCTATTCTTCGTTTTGCGAAAGAAACACATACGCCTGTATTGCTGATCGGAC
ATATTAATAAGGAAGGAAGTATTGCAGGACCTAAAGTGCTGGAACATATCGTAGATACTGTTCTTCAATTTGAGGGCGAC
CAACATTATATGTATCGTATTCTACGCAGTATCAAGAATCGTTTCGGTAGTACGGCAGAATTAGGTATTTATGAAATGCG
TCAGGATGGGTTGCGCCAAGTGAGTAATCCTTCCGAACTTTTGCTAAGTCAGGATCATGAAGGGATGAGCGGGGTAGCCA
TTGCCTCCGCCATTGAGGGGATTCGCCCATTTTTGATTGAGACACAGGCTTTGGTAAGCTCTGCAGTCTACGGAAATCCG
CAACGTTCGGCAACCGGTTTCGATTTGAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAGCGGGTGGGATTTAAGTT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGATTGAAAGTGAATGATCCGGCTATCGATCTGCCGGTTATCAGTG
CAATCCTTTCTTCCAATATGGATGCAGCCATTGAGCCGGAAGTTTGCATGGCGGGAGAAATCGGATTGTCGGGAGAGATA
CGTCCTGTGAATCGAATAGAACAACGTATCGGTGAAGCCGAGAAATTGGGTTTTAAACGGTTCTTGTTGCCAAAATATAA
TCTGCAAGGGATCGATACCCAAAAACTGAAGATAGAATTAGTACCGGTGAGAAAAGTAGAAGAGGCGTTCAGGGCTTTAT
TCGGATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (58-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.087	100	0.516
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479