Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GNX12_RS15420 Genome accession   NZ_CP046396
Coordinates   3255722..3256351 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ampC_0069     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250722..3261351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS15400 (GNX12_15400) ycbZ 3251122..3252882 (-) 1761 WP_000156473.1 Lon protease family protein -
  GNX12_RS15405 (GNX12_15405) matP 3253068..3253520 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GNX12_RS15410 (GNX12_15410) ompA 3253597..3254637 (-) 1041 WP_022645481.1 porin OmpA -
  GNX12_RS15415 (GNX12_15415) sulA 3254994..3255503 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  GNX12_RS15420 (GNX12_15420) sxy/tfoX 3255722..3256351 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GNX12_RS15425 (GNX12_15425) yccS 3256314..3258476 (-) 2163 WP_000875041.1 YccS family putative transporter -
  GNX12_RS15430 (GNX12_15430) yccF 3258486..3258932 (-) 447 WP_001261235.1 YccF domain-containing protein -
  GNX12_RS15435 (GNX12_15435) helD 3259055..3261109 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=403872 GNX12_RS15420 WP_000839153.1 3255722..3256351(+) (sxy/tfoX) [Escherichia coli strain ampC_0069]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=403872 GNX12_RS15420 WP_000839153.1 3255722..3256351(+) (sxy/tfoX) [Escherichia coli strain ampC_0069]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment