Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAR_RS12340 Genome accession   NC_015391
Coordinates   2589169..2590539 (-) Length   456 a.a.
NCBI ID   WP_013712072.1    Uniprot ID   F4BRH6
Organism   Carnobacterium sp. 17-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2584169..2595539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAR_RS12315 (CAR_c24770) epsC 2584337..2584867 (-) 531 WP_013712067.1 serine O-acetyltransferase EpsC -
  CAR_RS12320 (CAR_c24780) gltX 2585191..2586660 (-) 1470 WP_013712068.1 glutamate--tRNA ligase -
  CAR_RS12325 (CAR_c24790) ispF 2586724..2587221 (-) 498 WP_013712069.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CAR_RS12330 (CAR_c24800) ispD 2587252..2587959 (-) 708 WP_013712070.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CAR_RS12335 (CAR_c24810) - 2587971..2589083 (-) 1113 WP_013712071.1 PIN/TRAM domain-containing protein -
  CAR_RS12340 (CAR_c24820) radA 2589169..2590539 (-) 1371 WP_013712072.1 DNA repair protein RadA Machinery gene
  CAR_RS12345 (CAR_c24830) - 2590758..2591297 (-) 540 WP_013712073.1 dUTP diphosphatase -
  CAR_RS12350 (CAR_c24840) ugpC 2591531..2592637 (+) 1107 WP_041556727.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49692.38 Da        Isoelectric Point: 8.7991

>NTDB_id=40381 CAR_RS12340 WP_013712072.1 2589169..2590539(-) (radA) [Carnobacterium sp. 17-4]
MAKKKITKFVCQACGYESPKWMGRCPNCGSWNQMEEEIVADKNDRRSRVSMTGKTAKAEAIQDITVSKVPRVKTKLKELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESSSQIKMRANRLGVKGADFYIYPETDMGAIRQ
TIEDLKPDYVIIDSIQTMNQADITGAIGSVSQVRESTADLLKIAKTNNIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GERHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSEMFLEERLSGATGSAVVASMEGSRPILAEIQSLITPTAFG
NARRTASGLDYNRVSLIMAVLEKRAGLMLQNQDAYLKSAGGVKLDEPAIDLAIAISVASSYQEKETKETDCFIGEIGLTG
EIRRVSRIEQRVNEAAKLGFKRIMIPKNNIGGWTFPENIEVIGVMTIAEAIKKAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=40381 CAR_RS12340 WP_013712072.1 2589169..2590539(-) (radA) [Carnobacterium sp. 17-4]
GTGGCAAAAAAGAAAATTACTAAATTTGTCTGCCAAGCATGTGGTTATGAATCACCAAAATGGATGGGACGCTGTCCAAA
CTGTGGTAGTTGGAATCAAATGGAAGAAGAGATAGTAGCGGATAAAAATGATCGTAGAAGTCGTGTAAGTATGACTGGTA
AAACCGCTAAAGCTGAAGCAATTCAAGACATCACAGTATCTAAAGTTCCTAGAGTAAAAACAAAGTTAAAAGAATTAAAC
CGTGTTTTAGGAGGCGGAGTAGTACCGGGCTCGTTGGTTTTAATAGGTGGGGATCCTGGTATTGGAAAATCTACACTCTT
GCTGCAAGTTTCAGCTCAGTTAAATTTAGCTGGCGGAAAAGTTTTATATGTAAGTGGTGAAGAAAGCTCAAGTCAAATTA
AAATGCGTGCGAACCGTTTGGGTGTAAAGGGTGCAGATTTTTATATTTACCCTGAAACGGATATGGGTGCAATAAGGCAA
ACAATCGAGGACTTAAAGCCTGATTATGTTATTATTGATTCTATTCAAACCATGAACCAAGCCGATATTACAGGAGCAAT
AGGAAGTGTTTCCCAAGTTAGAGAAAGCACAGCTGATCTATTGAAAATTGCCAAAACGAATAATATTGCTATTTTTATTG
TAGGACATGTTACAAAAGAAGGATCTATTGCTGGTCCACGGATGTTGGAGCACATGGTAGATACGGTATTATATTTTGAA
GGAGAAAGACATCATACTTTCCGTATTTTAAGAGCGGTTAAAAATCGCTTTGGTTCAACTAATGAAATTGGGATTTTCGA
AATGCGCGAAGGCGGTTTAGTAGAAGTACTGAATCCTTCGGAAATGTTTCTCGAAGAACGTTTATCTGGAGCTACAGGTT
CTGCTGTAGTGGCTTCAATGGAAGGTTCACGTCCCATTTTAGCTGAAATCCAATCGTTGATTACACCGACTGCTTTTGGA
AATGCTCGTCGGACAGCTAGCGGGTTAGATTATAACCGTGTGTCTTTAATTATGGCTGTTCTAGAGAAGAGAGCAGGGCT
AATGCTGCAAAACCAAGATGCCTATTTAAAATCAGCAGGTGGCGTTAAATTGGATGAACCAGCAATCGACTTAGCTATTG
CTATTAGTGTGGCATCCAGTTACCAGGAAAAAGAAACAAAAGAAACCGATTGTTTTATTGGTGAAATTGGGTTAACTGGA
GAAATTAGACGAGTCAGCCGGATTGAACAACGGGTAAATGAGGCTGCTAAATTAGGGTTTAAACGGATTATGATTCCTAA
AAACAATATTGGTGGTTGGACGTTCCCTGAAAATATAGAGGTTATTGGTGTTATGACGATAGCTGAAGCTATAAAGAAAG
CTTTTTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(69-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4BRH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

70.175

100

0.702
  radA Streptococcus pneumoniae D39

70.175

100

0.702
  radA Streptococcus pneumoniae R6

70.175

100

0.702
  radA Streptococcus pneumoniae TIGR4

70.175

100

0.702
  radA Streptococcus mitis NCTC 12261

70.175

100

0.702
  radA Streptococcus mitis SK321

70.175

100

0.702
  radA Bacillus subtilis subsp. subtilis str. 168

68.709

100

0.689

Multiple sequence alignment