Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GK020_RS02390 Genome accession   NZ_CP046392
Coordinates   514876..515754 (+) Length   292 a.a.
NCBI ID   WP_087662501.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509876..520754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS02360 wrbA 510689..511285 (+) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -
  GK020_RS02365 - 511584..511766 (+) 183 WP_045796412.1 hypothetical protein -
  GK020_RS02370 - 511824..512204 (-) 381 WP_005182135.1 hypothetical protein -
  GK020_RS02375 - 512421..512996 (-) 576 WP_045796414.1 xanthine phosphoribosyltransferase -
  GK020_RS02380 - 513086..513799 (-) 714 WP_087662502.1 DUF3108 domain-containing protein -
  GK020_RS02385 - 513952..514635 (-) 684 WP_045796416.1 hypothetical protein -
  GK020_RS02390 tonB2 514876..515754 (+) 879 WP_087662501.1 energy transducer TonB Machinery gene
  GK020_RS02395 - 515751..516041 (-) 291 WP_087662500.1 antibiotic biosynthesis monooxygenase family protein -
  GK020_RS02400 ybeY 516130..516612 (-) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  GK020_RS02405 - 516632..517705 (-) 1074 WP_016659561.1 PhoH family protein -
  GK020_RS02410 miaB 517747..519201 (-) 1455 WP_104989127.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33005.67 Da        Isoelectric Point: 8.3962

>NTDB_id=403791 GK020_RS02390 WP_087662501.1 514876..515754(+) (tonB2) [Acinetobacter indicus strain WMB-7]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=403791 GK020_RS02390 WP_087662501.1 514876..515754(+) (tonB2) [Acinetobacter indicus strain WMB-7]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCTGCGGTCAAGGAAATTGCGG
TCAGCTTAAGACCAAGTGCCACTGAAATTAAGGATGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCATCGCATGTCCAGCGATATGCCTGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGCCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGTTGATGACCACCTTGAGCTGGCAAAAGCAGGCGG
CAGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGACAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTTCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGCTGGCCGGTGAAGTACGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCAATTCGTTTAATTGAA
AGCTCGGGGCATGCCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAACTGCGCATTATCCGGACCTGGCGTTTTGATCCGGCTGAGGCGGAGTTTGAGGTGCACTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.429

95.89

0.733

Multiple sequence alignment