Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GK020_RS01870 Genome accession   NZ_CP046392
Coordinates   409079..411301 (-) Length   740 a.a.
NCBI ID   WP_087662512.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404079..416301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS01845 - 404299..404568 (-) 270 WP_034598128.1 YdcH family protein -
  GK020_RS01850 - 404645..404983 (-) 339 WP_005181858.1 chaperone modulator CbpM -
  GK020_RS01855 - 405387..405848 (-) 462 WP_005181860.1 DUF2147 domain-containing protein -
  GK020_RS01860 - 406261..407136 (-) 876 WP_075175495.1 Hsp33 family molecular chaperone HslO -
  GK020_RS01865 - 407187..409028 (-) 1842 WP_087662513.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GK020_RS01870 priA 409079..411301 (-) 2223 WP_087662512.1 primosomal protein N' Machinery gene
  GK020_RS01875 gspF 411453..412658 (+) 1206 WP_045795388.1 type II secretion system inner membrane protein GspF -
  GK020_RS01880 gspG 412710..413147 (+) 438 WP_087662530.1 type II secretion system major pseudopilin GspG -
  GK020_RS01885 - 413427..413762 (+) 336 WP_045795389.1 hypothetical protein -
  GK020_RS01890 lnt 413912..415471 (-) 1560 WP_087662511.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84159.20 Da        Isoelectric Point: 8.7896

>NTDB_id=403790 GK020_RS01870 WP_087662512.1 409079..411301(-) (priA) [Acinetobacter indicus strain WMB-7]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKQAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMTRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIH
RKPEQCPQCQHSELKTLGIGTAKVEENLQQLFPDYEVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=403790 GK020_RS01870 WP_087662512.1 409079..411301(-) (priA) [Acinetobacter indicus strain WMB-7]
ATGCCAAATTCACCCGTCCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCCGAATATCAGCAGGCTGCCGTCGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCCTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCCTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACTTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTATTG
CGATCTGGAGCAGCAGGATTTTAGCCCGGTGCCGATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGCGACCAGAAAC
AGGCCATTGAAACCGTACTGAAAGCACAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAAGAGGTGCTAAAACAGGGCAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
CCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACCGGCAAAGCCTCCATTATTCTTGGTACGCGCTCGGCAATTTATACCCCGCTG
CCCAATTTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
CGATGTGGCCTTATACCGTGCCCATTTAGAACACTGCCCGGTGATTCTCGGTTCAGCCACCCCTAGTATTGACAGCTATG
CCCTGACCGAACAGGGTAAAATGACCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCGCTGATGCCCAAAATTCACATC
ATTGACTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAGAAACGCCTGCAGAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGTGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAACTTTACCCTGCATCATAGTCCGTATACCCATCTGCATTGCCATCATTGTGGCACCATTCAC
CGCAAGCCGGAGCAATGCCCACAGTGCCAGCATAGCGAACTGAAAACCCTGGGCATCGGTACGGCCAAGGTTGAAGAAAA
CCTGCAGCAGCTGTTCCCGGACTATGAGGTGGTGCGGGTAGACCGCGATTCTACCAGCCGCGTCGGCAGCTGGCAAAAAA
TCTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTGCTTGGCACCCAAATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTGACTCTGGTGGCGATTTTAGATATTGATGCCGGCCTGTTAAGTGTTGATATCCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGCCGCGGTGAACATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGACCATC
CGCTGCTGAGCACGCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCTGCCCTGCTG
CCCCCGTTTCGCTATACCGCCCTGATTCGCTGCGAATCCAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
TCAATGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGCCCGATTCCGGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.585

100

0.738

Multiple sequence alignment