Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GK020_RS01390 Genome accession   NZ_CP046392
Coordinates   300939..301265 (+) Length   108 a.a.
NCBI ID   WP_045796511.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 295939..306265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS01365 hemC 296618..297535 (+) 918 WP_104989205.1 hydroxymethylbilane synthase -
  GK020_RS01370 - 297537..298316 (+) 780 WP_104989204.1 uroporphyrinogen-III synthase -
  GK020_RS01375 - 298313..299158 (+) 846 WP_104989203.1 hypothetical protein -
  GK020_RS01380 - 299161..300354 (+) 1194 WP_087662533.1 hypothetical protein -
  GK020_RS01385 - 300365..300793 (+) 429 WP_104989202.1 acyl-CoA thioesterase -
  GK020_RS01390 hns 300939..301265 (+) 327 WP_045796511.1 H-NS family nucleoid-associated regulatory protein Regulator
  GK020_RS01395 gspN 301429..302169 (+) 741 WP_156188748.1 type II secretion system protein N -
  GK020_RS01400 - 302169..303005 (+) 837 WP_104989200.1 type II secretion system protein N -
  GK020_RS01405 gspD 303046..305295 (+) 2250 WP_156188749.1 type II secretion system secretin GspD -
  GK020_RS01410 - 305362..306069 (+) 708 WP_104472166.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12269.03 Da        Isoelectric Point: 8.4694

>NTDB_id=403786 GK020_RS01390 WP_045796511.1 300939..301265(+) (hns) [Acinetobacter indicus strain WMB-7]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANVN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=403786 GK020_RS01390 WP_045796511.1 300939..301265(+) (hns) [Acinetobacter indicus strain WMB-7]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTCCGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGTCAAT
GAAACCTGGACGGGTCGCGGTAAGCAACCACGCTGGTTAGTGGCGGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment