Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GK020_RS00970 Genome accession   NZ_CP046392
Coordinates   206856..208013 (-) Length   385 a.a.
NCBI ID   WP_104989250.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201856..213013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS00945 - 202132..202740 (-) 609 WP_104989255.1 hypothetical protein -
  GK020_RS00950 - 202923..203465 (-) 543 WP_045796641.1 glutathione peroxidase -
  GK020_RS00955 - 203794..204705 (+) 912 WP_045796654.1 DMT family transporter -
  GK020_RS00960 - 205086..205652 (-) 567 WP_104989252.1 L-threonylcarbamoyladenylate synthase -
  GK020_RS00965 dprA 205697..206839 (-) 1143 WP_104989251.1 DNA-processing protein DprA Machinery gene
  GK020_RS00970 tsaP 206856..208013 (-) 1158 WP_104989250.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GK020_RS00975 def 208133..208657 (+) 525 WP_005181462.1 peptide deformylase -
  GK020_RS00980 - 208748..209170 (+) 423 WP_016658991.1 DUF2946 family protein -
  GK020_RS00985 - 209244..211295 (+) 2052 WP_156188732.1 TonB-dependent copper receptor -
  GK020_RS00990 - 211430..212581 (+) 1152 WP_005176703.1 IS4-like element ISAbe18 family transposase -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42544.58 Da        Isoelectric Point: 8.8342

>NTDB_id=403781 GK020_RS00970 WP_104989250.1 206856..208013(-) (tsaP) [Acinetobacter indicus strain WMB-7]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQHTPYILGTADQRVLAAKAQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=403781 GK020_RS00970 WP_104989250.1 206856..208013(-) (tsaP) [Acinetobacter indicus strain WMB-7]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACCGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAATCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGTCGCCCGATCATTGGCAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTAATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACATACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
AGCCAAAGCCCAGAATGTTTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCCGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGACATTACCACGCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCAATGTTACCAACCCTGTTCTACCCGACCAATGCCGAACATATTGCAGCAGATGGCCAGGTGGTGCGTG
TGATGGGTTCAATTGGGACCGCGGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCTCACGGCGTGCAATCCGGT
CATGTATTTGCGGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
GATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAGCTGCCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.66

Multiple sequence alignment