Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GM421_RS06995 Genome accession   NZ_CP046390
Coordinates   1332926..1334302 (+) Length   458 a.a.
NCBI ID   WP_014565235.1    Uniprot ID   A0A6G6GUF0
Organism   Lactobacillus delbrueckii strain TS1-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1327926..1339302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM421_RS06965 (GM421_06965) fabZ 1328680..1329141 (+) 462 WP_003618306.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GM421_RS06970 (GM421_06970) - 1329254..1330189 (+) 936 WP_156301416.1 AAA family ATPase -
  GM421_RS06975 (GM421_06975) - 1330183..1330476 (+) 294 WP_002879759.1 hypothetical protein -
  GM421_RS06980 (GM421_06980) pepC 1330543..1331892 (-) 1350 WP_156301417.1 aminopeptidase C -
  GM421_RS06985 (GM421_06985) - 1331978..1332265 (-) 288 WP_003618267.1 hypothetical protein -
  GM421_RS06990 (GM421_06990) - 1332372..1332926 (+) 555 WP_003612504.1 dUTP diphosphatase -
  GM421_RS06995 (GM421_06995) radA 1332926..1334302 (+) 1377 WP_014565235.1 DNA repair protein RadA Machinery gene
  GM421_RS07000 (GM421_07000) - 1334412..1335359 (+) 948 WP_156301418.1 glycosyltransferase family 8 protein -
  GM421_RS07010 (GM421_07010) - 1335632..1336795 (+) 1164 Protein_1337 EAL domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50051.54 Da        Isoelectric Point: 6.6143

>NTDB_id=403774 GM421_RS06995 WP_014565235.1 1332926..1334302(+) (radA) [Lactobacillus delbrueckii strain TS1-06]
MARARTQYKCRSCGYISASYLGRCPNCGAWNQFEKESQEVRQTSTKATPSRLMASVGAKEAVKMSTVKAEKEERVLTKSS
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQIKLRADRLGLGQSPMLLYPESNMEHI
RDQIDDVKPDFVVIDSIQTMNEPSLDSMVGSASQVREVTAELMKIAKLDQVTVFVIGHVTKEGSIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMKTEGLAEVTNPSALFLDERLPDSTGSAVVVSLEGTRPILGEIQALVTPTA
FGYAKRTTSGLDYNRVSLLLAVLEKRGNLMLQNQDAYLSATGGIRLNEPAIDLAIAMAIASSYYDKEISATDCFVGEIGL
TGEVRRVNQIQARVKEAGKVGFKRIFIPKYNMSPALQDLGIEVIPVSSVRQALHYLFS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=403774 GM421_RS06995 WP_014565235.1 1332926..1334302(+) (radA) [Lactobacillus delbrueckii strain TS1-06]
ATGGCCAGAGCTAGAACCCAGTATAAGTGCCGGTCTTGCGGCTACATCTCCGCTTCTTACCTGGGCCGGTGCCCGAACTG
CGGGGCCTGGAACCAGTTTGAAAAAGAAAGCCAGGAGGTCCGCCAGACTTCTACTAAAGCTACCCCCAGCCGCCTGATGG
CCAGCGTGGGTGCTAAAGAAGCCGTTAAAATGTCCACCGTCAAGGCGGAAAAAGAAGAGCGGGTCTTAACCAAGTCCTCT
GAACTTAACCGGGTCTTAGGCGGCGGGATCGTACCAGGCTCTTTGGTCTTGATTGGCGGGGACCCCGGCATTGGCAAGTC
CACTTTGATGCTGCAGATCATGAGCGAACTGGCCGAAAAATACAAGGTCCTCTACGTCTCCGGGGAAGAATCTGCCAGCC
AGATCAAGCTGCGGGCTGACCGCTTAGGCCTGGGCCAAAGCCCCATGCTTTTATACCCGGAAAGCAACATGGAACACATC
CGCGACCAGATCGACGACGTTAAGCCAGATTTTGTCGTGATCGACTCCATCCAGACCATGAATGAACCCAGCCTGGACTC
CATGGTGGGCTCAGCTTCCCAGGTCCGGGAAGTTACCGCCGAATTGATGAAGATCGCCAAGCTGGACCAGGTCACTGTCT
TTGTCATCGGCCACGTGACCAAGGAAGGGTCCATCGCCGGGCCGAAAATCCTGGAGCACATGGTTGACACCGTCCTTTAC
TTTGAAGGTGACGAGCACCATGCCTACCGGATCCTGCACTCAGTCAAGAACCGTTTTGGGGCGGCCAACGAAATCGGCAT
GTTTGAAATGAAGACCGAAGGCCTGGCAGAAGTGACCAATCCTTCCGCTCTCTTCTTAGATGAACGCTTGCCCGACTCAA
CTGGGTCAGCCGTGGTCGTTTCTTTAGAAGGCACCCGGCCGATCTTGGGCGAAATCCAGGCCCTGGTCACCCCAACCGCC
TTCGGCTATGCCAAGCGGACTACTTCGGGCCTGGACTACAACCGGGTCTCCCTGCTTTTAGCCGTTTTGGAAAAAAGGGG
GAACCTAATGTTGCAGAACCAGGACGCCTATTTATCAGCGACCGGCGGCATCCGCTTAAACGAACCGGCCATTGACCTGG
CCATCGCCATGGCCATTGCCTCCAGTTACTATGACAAGGAAATCTCCGCGACTGACTGCTTTGTCGGGGAAATCGGCCTG
ACTGGGGAAGTCCGCCGGGTCAACCAGATCCAGGCCCGGGTCAAGGAAGCCGGCAAGGTTGGCTTCAAGCGGATTTTTAT
CCCGAAATACAATATGAGCCCGGCCTTGCAGGATTTGGGGATTGAGGTAATTCCGGTCTCCAGCGTCCGCCAGGCCCTCC
ACTACCTTTTCTCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6GUF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

56.114

100

0.561
  radA Streptococcus mitis NCTC 12261

56.114

100

0.561
  radA Streptococcus pneumoniae Rx1

56.114

100

0.561
  radA Streptococcus pneumoniae D39

56.114

100

0.561
  radA Streptococcus pneumoniae R6

56.114

100

0.561
  radA Streptococcus pneumoniae TIGR4

56.114

100

0.561
  radA Bacillus subtilis subsp. subtilis str. 168

55.604

99.345

0.552

Multiple sequence alignment