Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HW371_RS09005 Genome accession   NZ_CP058220
Coordinates   1908099..1909526 (-) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain 83972     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903099..1914526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW371_RS08970 (HW371_08905) hisL 1903683..1903733 (-) 51 WP_001364200.1 his operon leader peptide -
  HW371_RS08975 (HW371_08910) yefM 1904016..1904267 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HW371_RS08980 (HW371_08915) yoeB 1904264..1904518 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HW371_RS08985 (HW371_08920) yeeZ 1904601..1905425 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HW371_RS08990 (HW371_08925) yeeY 1905471..1906400 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HW371_RS08995 (HW371_08930) yoeI 1906615..1906677 (+) 63 WP_010723108.1 membrane protein YoeI -
  HW371_RS09000 (HW371_08935) plaP 1906667..1908025 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HW371_RS09005 (HW371_08940) sbcB 1908099..1909526 (-) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  HW371_RS09010 (HW371_08945) dacD 1909735..1910901 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HW371_RS09015 (HW371_08950) sbmC 1911020..1911493 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HW371_RS09020 (HW371_08955) yeeA 1911691..1912749 (+) 1059 WP_001200890.1 FUSC family protein -
  HW371_RS09025 (HW371_08960) tmaR 1912921..1913250 (+) 330 WP_000450409.1 DUF496 family protein -
  HW371_RS24810 (HW371_08965) - 1913351..1913533 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HW371_RS24965 (HW371_08970) - 1913596..1913733 (+) 138 Protein_1778 transposase domain-containing protein -
  HW371_RS09040 (HW371_08975) - 1914022..1914114 (-) 93 Protein_1779 DUF957 domain-containing protein -
  HW371_RS09045 (HW371_08980) yeeW 1914148..1914342 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=403770 HW371_RS09005 WP_000980604.1 1908099..1909526(-) (sbcB) [Escherichia coli strain 83972]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=403770 HW371_RS09005 WP_000980604.1 1908099..1909526(-) (sbcB) [Escherichia coli strain 83972]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583