Detailed information NTG0403757

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HW371_RS05710
• Genome accession: NZ_CP058220
• Coordinates: 1181484..1182476 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 83972
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1176484..1187476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW371_RS05680 (HW371_05620)	ispD	1176545..1177255 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HW371_RS05685 (HW371_05625)	ispF	1177255..1177734 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HW371_RS05690 (HW371_05630)	truD	1177731..1178780 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HW371_RS05695 (HW371_05635)	surE	1178761..1179522 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HW371_RS05700 (HW371_05640)	pcm	1179516..1180142 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HW371_RS05705 (HW371_05645)	nlpD	1180327..1181421 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
HW371_RS05710 (HW371_05650)	rpoS	1181484..1182476 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HW371_RS05715 (HW371_05655)	-	1182654..1183205 (-)	552	WP_001179443.1	flavodoxin family protein	-
HW371_RS05720 (HW371_05660)	-	1183430..1184473 (+)	1044	WP_001161574.1	MBL fold metallo-hydrolase	-
HW371_RS05725 (HW371_05665)	ygbN	1184616..1185980 (-)	1365	WP_000104433.1	GntP family transporter	-
HW371_RS05730 (HW371_05670)	ygbM	1186069..1186845 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=403757 HW371_RS05710 WP_000081550.1 1181484..1182476(+) (rpoS) [Escherichia coli strain 83972]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=403757 HW371_RS05710 WP_000081550.1 1181484..1182476(+) (rpoS) [Escherichia coli strain 83972]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715