Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | HW372_RS20825 | Genome accession | NZ_CP058217 |
| Coordinates | 4340799..4341275 (-) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli Nissle 1917 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4335799..4346275
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW372_RS24395 | - | 4337912..4338217 (-) | 306 | Protein_4103 | helix-turn-helix domain-containing protein | - |
| HW372_RS24400 | - | 4338480..4338593 (-) | 114 | Protein_4104 | transcriptional regulator | - |
| HW372_RS20795 (HW372_20625) | - | 4338584..4338733 (-) | 150 | Protein_4105 | hypothetical protein | - |
| HW372_RS20800 (HW372_20630) | - | 4338839..4339015 (-) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| HW372_RS20805 (HW372_20635) | - | 4339032..4339520 (-) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| HW372_RS20810 (HW372_20640) | - | 4339517..4339894 (-) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| HW372_RS20815 (HW372_20645) | - | 4339984..4340352 (-) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| HW372_RS20820 (HW372_20650) | - | 4340515..4340736 (-) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| HW372_RS20825 (HW372_20655) | radC | 4340799..4341275 (-) | 477 | WP_001186775.1 | JAB domain-containing protein | Machinery gene |
| HW372_RS20830 (HW372_20660) | - | 4341291..4341764 (-) | 474 | WP_001350782.1 | antirestriction protein | - |
| HW372_RS20835 (HW372_20665) | - | 4342106..4342924 (-) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| HW372_RS20840 (HW372_20670) | - | 4343042..4343237 (-) | 196 | Protein_4114 | DUF905 family protein | - |
| HW372_RS20845 (HW372_20675) | - | 4343308..4346154 (-) | 2847 | WP_001704156.1 | Ag43/Cah family autotransporter adhesin | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=403711 HW372_RS20825 WP_001186775.1 4340799..4341275(-) (radC) [Escherichia coli Nissle 1917]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=403711 HW372_RS20825 WP_001186775.1 4340799..4341275(-) (radC) [Escherichia coli Nissle 1917]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |