Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HW372_RS17520 Genome accession   NZ_CP058217
Coordinates   3645958..3646563 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli Nissle 1917     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3640958..3651563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW372_RS17500 (HW372_17345) aes 3641099..3642058 (+) 960 WP_000801819.1 acetyl esterase -
  HW372_RS17505 (HW372_17350) hemH 3642055..3643017 (-) 963 WP_001250114.1 ferrochelatase -
  HW372_RS17510 (HW372_17355) adk 3643149..3643793 (-) 645 WP_001313630.1 adenylate kinase -
  HW372_RS17515 (HW372_17360) htpG 3643974..3645848 (-) 1875 WP_001704251.1 molecular chaperone HtpG -
  HW372_RS17520 (HW372_17365) recR 3645958..3646563 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HW372_RS17525 (HW372_17370) ybaB 3646563..3646892 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HW372_RS17530 (HW372_17375) dnaX 3646945..3648876 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HW372_RS17535 (HW372_17380) apt 3649005..3649556 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HW372_RS17540 (HW372_17385) ybaN 3649709..3650086 (-) 378 WP_001188900.1 DUF454 family protein -
  HW372_RS17545 (HW372_17390) priC 3650156..3650683 (+) 528 WP_000858961.1 primosomal replication protein N'' -
  HW372_RS17550 (HW372_17395) rsmS 3650697..3650858 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=403701 HW372_RS17520 WP_001195025.1 3645958..3646563(-) (recR) [Escherichia coli Nissle 1917]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=403701 HW372_RS17520 WP_001195025.1 3645958..3646563(-) (recR) [Escherichia coli Nissle 1917]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443