Detailed information NTG0403669

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HW372_RS05615
• Genome accession: NZ_CP058217
• Coordinates: 1170628..1171620 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli Nissle 1917
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1165628..1176620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW372_RS05585 (HW372_05525)	ispD	1165689..1166399 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HW372_RS05590 (HW372_05530)	ispF	1166399..1166878 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HW372_RS05595 (HW372_05535)	truD	1166875..1167924 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HW372_RS05600 (HW372_05540)	surE	1167905..1168666 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HW372_RS05605 (HW372_05545)	pcm	1168660..1169286 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HW372_RS05610 (HW372_05550)	nlpD	1169471..1170565 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
HW372_RS05615 (HW372_05555)	rpoS	1170628..1171620 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HW372_RS05620 (HW372_05560)	-	1171798..1172349 (-)	552	WP_001179443.1	flavodoxin family protein	-
HW372_RS05625 (HW372_05565)	-	1172574..1173617 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
HW372_RS05630 (HW372_05570)	ygbN	1173760..1175124 (-)	1365	WP_000104433.1	GntP family transporter	-
HW372_RS05635 (HW372_05575)	ygbM	1175213..1175989 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=403669 HW372_RS05615 WP_000081550.1 1170628..1171620(+) (rpoS) [Escherichia coli Nissle 1917]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=403669 HW372_RS05615 WP_000081550.1 1170628..1171620(+) (rpoS) [Escherichia coli Nissle 1917]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715