Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CAR_RS03795 Genome accession   NC_015391
Coordinates   781603..783417 (+) Length   604 a.a.
NCBI ID   WP_013710390.1    Uniprot ID   -
Organism   Carnobacterium sp. 17-4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 776603..788417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAR_RS03775 (CAR_c07500) - 777617..778558 (+) 942 WP_013710386.1 ATP-binding cassette domain-containing protein -
  CAR_RS03780 (CAR_c07510) spxA 778995..779393 (+) 399 WP_013710387.1 transcriptional regulator SpxA -
  CAR_RS03785 (CAR_c07520) - 779545..780216 (+) 672 WP_013710388.1 adaptor protein MecA -
  CAR_RS03790 (CAR_c07530) - 780344..781519 (+) 1176 WP_013710389.1 competence protein CoiA family protein -
  CAR_RS03795 (CAR_c07540) pepF 781603..783417 (+) 1815 WP_013710390.1 oligoendopeptidase F Regulator
  CAR_RS03800 (CAR_c07550) - 783483..784172 (-) 690 WP_013710391.1 DsbA family protein -
  CAR_RS03805 (CAR_c07560) - 784358..784930 (-) 573 WP_013710392.1 CYTH domain-containing protein -
  CAR_RS03810 (CAR_c07570) - 785090..785749 (+) 660 WP_041556806.1 GTP pyrophosphokinase family protein -
  CAR_RS03815 (CAR_c07580) - 785808..786620 (+) 813 WP_041556152.1 NAD kinase -
  CAR_RS03820 (CAR_c07590) - 786610..787521 (+) 912 WP_013710395.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69632.62 Da        Isoelectric Point: 4.8843

>NTDB_id=40366 CAR_RS03795 WP_013710390.1 781603..783417(+) (pepF) [Carnobacterium sp. 17-4]
MSKSKKLPIRNEVPNELTWNLEVIFQSDDDFKKSYKELEDKIGFVTSYKGTLDNGSDRFLKVIQSILDLSNQLETLYVYA
QLKNDQDTTNSIYQGMYEQASKLATQANEAISWFEPEVLELSEEKIAHYFSENEDLAIYKHFIEQLTAARKHVLSANEEA
LLAGAGEIFNASSRTFNILNNADITFPTIKDEEGNDIQLSHGVYGQLMESTDRSVRESAFKHLYKVYEGLQNTFSSTLSS
HVKYHNYNAKVHHYQSAREKALSNNHIPEAVHDTLLDVVHEHLPLLHRYVALRKELLEVEELHMYDMYTPISGEAGIKYT
YKDAEAETLKALEPLGEEYLSVLKKAFNNRWIDSVENEGKRSGAYSSGSYDTNPYILLNWHDSLNHLYTLVHELGHSVHS
YYTRTNQPYVYGDYSIFLAEIASTTNENILTDYLLETQKDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHEEDAKGT
PLTSEFLSNYYGDLNARYYGPDVVRDPEIAFEWTRIPHFYYNYYVYQYSTGFSAATALADKIVKGEEGALDNYLNYLKSG
SSDYPIEVMKKAGVDMTKKTYLEDAMKVFESRLNELEELIETLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=40366 CAR_RS03795 WP_013710390.1 781603..783417(+) (pepF) [Carnobacterium sp. 17-4]
ATGAGTAAATCAAAAAAACTGCCAATAAGAAATGAAGTACCTAATGAATTGACATGGAATCTAGAAGTTATTTTTCAATC
CGATGATGACTTCAAAAAATCTTATAAAGAACTTGAAGATAAAATAGGATTTGTTACATCTTATAAAGGAACACTTGATA
ACGGATCAGACAGGTTTTTAAAAGTTATTCAATCTATTTTAGATTTATCAAATCAATTGGAAACATTGTATGTCTATGCT
CAATTAAAAAATGATCAAGACACAACAAACTCAATCTATCAAGGAATGTATGAACAAGCCAGTAAATTAGCTACACAGGC
TAACGAAGCCATTTCGTGGTTTGAACCTGAAGTTTTAGAATTGTCAGAAGAAAAAATAGCCCACTATTTTAGTGAGAATG
AAGATTTAGCAATTTACAAACATTTTATCGAGCAATTAACAGCTGCTAGAAAACACGTTTTGAGTGCCAATGAAGAAGCA
TTGTTAGCAGGGGCAGGAGAAATTTTTAATGCTTCAAGCCGCACATTTAACATTTTAAATAATGCAGATATAACTTTCCC
AACCATTAAGGACGAAGAAGGAAACGATATTCAGTTATCACACGGTGTATATGGACAATTAATGGAAAGTACAGATCGTT
CTGTTCGCGAATCAGCTTTCAAACACCTGTATAAGGTGTATGAAGGTTTACAGAATACTTTTTCAAGTACCCTCTCTTCA
CATGTTAAATACCATAATTACAATGCTAAAGTTCATCACTATCAATCTGCACGTGAGAAAGCATTAAGCAACAATCATAT
ACCAGAAGCTGTACATGATACATTATTAGATGTTGTTCATGAACATTTACCTTTGCTGCATCGTTATGTTGCTTTGAGAA
AAGAGCTGCTAGAGGTAGAAGAACTTCATATGTATGATATGTATACTCCAATAAGTGGTGAAGCAGGAATTAAATATACG
TATAAAGATGCTGAAGCAGAAACATTAAAAGCGTTGGAACCGCTTGGTGAAGAGTACTTATCTGTACTGAAAAAAGCATT
TAATAATCGTTGGATCGATAGTGTTGAAAATGAAGGGAAAAGAAGCGGTGCCTATTCTTCTGGATCATACGATACGAATC
CTTACATCTTATTAAACTGGCATGACTCTTTAAATCATTTGTATACGCTGGTCCATGAACTAGGTCATAGTGTTCACAGC
TATTATACAAGAACGAATCAACCCTATGTCTATGGTGATTATTCTATCTTCTTAGCAGAAATAGCCTCCACTACAAATGA
AAATATTTTAACAGATTATTTATTAGAAACACAAAAAGATCCAAAAGTTAGAGCTTATGTGCTGAATCACTATTTAGATG
GATTTAAAGGAACTATATTTAGACAAACTCAGTTCGCGGAATTCGAACATTTTATTCATGAAGAAGATGCAAAGGGAACA
CCTTTAACAAGTGAGTTTTTATCAAATTATTACGGTGATCTAAATGCCCGTTATTACGGGCCAGATGTTGTAAGAGATCC
TGAAATTGCTTTCGAATGGACTAGAATACCTCATTTTTATTACAATTACTATGTTTATCAATATTCAACAGGCTTTTCAG
CTGCTACAGCTTTAGCCGATAAGATCGTTAAAGGTGAAGAAGGCGCTTTAGACAACTATTTAAATTATTTGAAATCTGGA
AGCAGTGATTATCCTATTGAGGTAATGAAAAAAGCAGGGGTAGACATGACTAAGAAAACCTATCTAGAAGATGCTATGAA
AGTTTTTGAATCTAGATTAAATGAATTAGAAGAGCTTATTGAAACCTTAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

98.013

0.522

Multiple sequence alignment