Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GMX10_RS02355 Genome accession   NZ_CP046377
Coordinates   482698..483258 (+) Length   186 a.a.
NCBI ID   WP_039483661.1    Uniprot ID   -
Organism   Pectobacterium parvum strain PZ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 477698..488258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMX10_RS02345 (GMX10_02360) - 479104..479523 (-) 420 WP_111779150.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GMX10_RS02350 (GMX10_02365) uvrA 479539..482373 (-) 2835 WP_161546638.1 excinuclease ABC subunit UvrA -
  GMX10_RS02355 (GMX10_02370) ssb 482698..483258 (+) 561 WP_039483661.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GMX10_RS02360 (GMX10_02375) - 483842..484123 (+) 282 WP_039483659.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19670.63 Da        Isoelectric Point: 5.2456

>NTDB_id=403611 GMX10_RS02355 WP_039483661.1 482698..483258(+) (ssb) [Pectobacterium parvum strain PZ1]
MASRGVNKVILVGNLGQDPEIRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNNASANNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=403611 GMX10_RS02355 WP_039483661.1 482698..483258(+) (ssb) [Pectobacterium parvum strain PZ1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAATCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGCGTGGTCCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAAGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGTGCGCAGTCTCAACAGCGTCCTGCA
CAGAACAATGCTTCCGCAAACAATGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.745

100

0.715
  ssb Glaesserella parasuis strain SC1401

55.497

100

0.57
  ssb Neisseria meningitidis MC58

45.652

98.925

0.452
  ssb Neisseria gonorrhoeae MS11

45.652

98.925

0.452
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.912

97.849

0.371

Multiple sequence alignment