Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CAR_RS03350 Genome accession   NC_015391
Coordinates   674729..676447 (+) Length   572 a.a.
NCBI ID   WP_013710301.1    Uniprot ID   -
Organism   Carnobacterium sp. 17-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669729..681447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAR_RS03320 (CAR_c06590) - 669760..670626 (+) 867 WP_041556130.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  CAR_RS03325 (CAR_c06600) xseA 670742..672082 (+) 1341 WP_041556131.1 exodeoxyribonuclease VII large subunit -
  CAR_RS03330 (CAR_c06610) - 672079..672321 (+) 243 WP_013710297.1 exodeoxyribonuclease VII small subunit -
  CAR_RS03335 (CAR_c06620) - 672337..673236 (+) 900 WP_013710298.1 polyprenyl synthetase family protein -
  CAR_RS03340 (CAR_c06630) - 673255..674082 (+) 828 WP_013710299.1 TlyA family RNA methyltransferase -
  CAR_RS03345 (CAR_c06640) argR 674245..674694 (+) 450 WP_013710300.1 arginine repressor -
  CAR_RS03350 (CAR_c06650) recN 674729..676447 (+) 1719 WP_013710301.1 DNA repair protein RecN Machinery gene
  CAR_RS03355 (CAR_c06660) msrA 676539..677189 (-) 651 WP_013710302.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CAR_RS12890 - 677259..677411 (-) 153 WP_238526708.1 DUF4044 domain-containing protein -
  CAR_RS03360 (CAR_c06670) - 677464..678420 (-) 957 WP_013710303.1 magnesium transporter CorA family protein -
  CAR_RS03365 (CAR_c06680) gndA 678759..680192 (+) 1434 WP_013710304.1 NADP-dependent phosphogluconate dehydrogenase -
  CAR_RS03370 (CAR_c06690) - 680480..681172 (+) 693 WP_013710305.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64999.05 Da        Isoelectric Point: 4.8001

>NTDB_id=40358 CAR_RS03350 WP_013710301.1 674729..676447(+) (recN) [Carnobacterium sp. 17-4]
MLQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRGSSEFIRHGATKCVLEALFSLEGNSTTYKLL
KDYDIDSEEDSVIIQRDIHRSGKNVCRINGRLVTIATLRLIGESIIDIHGQNEHQELMNPERHLSMLDHFGDQELVRLKK
NYQETYADYKKVKKAFDKWQNGEQELAQRLDMLQYQTNEIEMAELLDGEEEELLEEKNLLANYQKIMSALSMSYDALQGD
EVNGIDLIGNAMTEMNSIEEIDEKYKILSEAISSSYFQLQEAASDILREMDQTAYDEDRLNEIEKRLETIKQLKRKYGES
IVEIKMYYEKIAAELNQILNRENHLTNMTKELSSLSKELIKRGNELSEKRRVVAKNIEQAIHEQLKELYMEKVVFEVQFF
KPVQDFTSETAHESGFDEVEFYIATNMGEPLKPLARVASGGELSRMMLAMKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYMVAVHSQVLCITHLPQVAAMADNHLYISKSVENDRTKTHVNSLVSLEKIEEIARMLAGTEITKLTLEHAKELTIL
AETEKQKQKQLS

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=40358 CAR_RS03350 WP_013710301.1 674729..676447(+) (recN) [Carnobacterium sp. 17-4]
GTGCTTCAGGAATTAACAATTAAGGATTTTGCAATCATACAAGATTTGAATCTTAGTTTTAATCGTGGTATGACTGTTTT
AACCGGAGAAACAGGGGCAGGGAAATCGATTATTATTGATGCGGTTGGGCTGCTTGCAGGTGGAAGAGGATCCAGTGAAT
TTATTCGTCATGGTGCAACTAAGTGTGTCCTAGAAGCGTTGTTTTCATTAGAAGGAAATTCCACTACTTATAAGTTACTA
AAAGACTATGATATAGACAGTGAAGAAGATAGTGTGATTATTCAGCGAGACATTCATCGTAGTGGTAAAAATGTTTGTCG
AATCAACGGTCGTTTAGTAACGATCGCTACCTTGCGTCTAATTGGAGAATCGATTATTGATATTCACGGACAAAATGAAC
ATCAAGAATTAATGAATCCAGAACGTCATTTAAGTATGTTAGATCATTTTGGTGATCAGGAATTAGTGAGATTAAAAAAG
AATTATCAAGAAACTTATGCAGACTATAAAAAAGTAAAAAAAGCTTTTGATAAATGGCAAAATGGAGAACAAGAACTAGC
ACAACGATTAGATATGCTTCAGTACCAAACAAATGAAATTGAAATGGCTGAACTTCTTGATGGTGAGGAAGAAGAGCTGT
TAGAAGAAAAAAATTTGTTAGCTAATTATCAAAAAATTATGTCTGCATTATCAATGAGCTATGATGCTTTGCAAGGAGAT
GAAGTCAATGGAATTGACTTGATTGGAAATGCCATGACTGAAATGAATTCTATTGAAGAAATAGATGAAAAATACAAAAT
CTTGTCAGAAGCAATTTCAAGTAGTTACTTTCAGCTTCAAGAAGCTGCTAGTGACATTTTAAGAGAAATGGATCAAACAG
CATATGATGAGGATCGCCTTAATGAAATTGAAAAAAGACTTGAAACCATCAAACAATTAAAACGTAAATATGGCGAGTCT
ATTGTAGAAATCAAGATGTATTATGAAAAAATTGCAGCAGAATTAAATCAAATTTTAAATCGTGAAAATCACCTGACGAA
TATGACAAAAGAGTTATCCAGTTTATCGAAAGAATTGATTAAGCGAGGTAACGAACTTTCTGAAAAACGTAGAGTGGTAG
CCAAAAATATTGAACAAGCCATTCATGAACAGTTAAAAGAATTGTATATGGAAAAAGTGGTATTTGAAGTTCAATTTTTT
AAACCGGTTCAAGATTTTACGAGTGAAACTGCACACGAGTCTGGCTTTGATGAGGTAGAATTCTATATTGCTACAAATAT
GGGTGAACCGTTAAAACCTTTGGCTAGGGTAGCCTCTGGAGGAGAATTATCTCGTATGATGTTAGCGATGAAAACCATTT
TTTCTAAATCTCAGGGTATTACTAGTATTATATTTGATGAGGTAGATACCGGTGTCAGCGGACGAGTCGCTCAAGCGATT
GCAAATAAGATTTATATGGTAGCTGTTCATTCGCAAGTCCTCTGCATTACGCATTTGCCTCAAGTAGCTGCGATGGCAGA
TAACCATTTATATATTTCAAAAAGTGTGGAAAATGATCGTACAAAAACGCATGTCAATTCTTTAGTGTCTTTAGAAAAAA
TTGAAGAAATTGCCCGTATGTTAGCAGGTACTGAAATCACAAAATTGACTTTAGAACATGCTAAAGAATTAACTATTTTA
GCTGAAACAGAAAAACAAAAGCAAAAGCAATTGAGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.53

98.951

0.5

Multiple sequence alignment