Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GL258_RS11785 Genome accession   NZ_CP046363
Coordinates   2222511..2223872 (-) Length   453 a.a.
NCBI ID   WP_188019505.1    Uniprot ID   -
Organism   Macrococcoides canis strain Epi0082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217511..2228872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL258_RS11760 (GL258_11705) cysE 2217936..2218553 (-) 618 WP_414739137.1 serine O-acetyltransferase -
  GL258_RS11765 (GL258_11710) gltX 2218828..2220285 (-) 1458 WP_188020210.1 glutamate--tRNA ligase -
  GL258_RS11770 (GL258_11715) ispF 2220300..2220779 (-) 480 WP_188019502.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GL258_RS11775 (GL258_11720) ispD 2220776..2221456 (-) 681 WP_188019503.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GL258_RS11780 (GL258_11725) - 2221449..2222498 (-) 1050 WP_188019504.1 PIN/TRAM domain-containing protein -
  GL258_RS11785 (GL258_11730) radA 2222511..2223872 (-) 1362 WP_188019505.1 DNA repair protein RadA Machinery gene
  GL258_RS11790 (GL258_11735) - 2224056..2226482 (-) 2427 WP_164954093.1 ATP-dependent Clp protease ATP-binding subunit -
  GL258_RS11795 (GL258_11740) - 2226492..2227496 (-) 1005 WP_164953975.1 protein arginine kinase -
  GL258_RS11800 (GL258_11745) - 2227486..2227872 (-) 387 WP_158290763.1 UvrB/UvrC motif-containing protein -
  GL258_RS11805 (GL258_11750) - 2227883..2228344 (-) 462 WP_086043535.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50229.89 Da        Isoelectric Point: 7.4624

>NTDB_id=403568 GL258_RS11785 WP_188019505.1 2222511..2223872(-) (radA) [Macrococcoides canis strain Epi0082]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESQSDNKVEKLKDITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQNHPVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETV
KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLSLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGYDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKIAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=403568 GL258_RS11785 WP_188019505.1 2222511..2223872(-) (radA) [Macrococcoides canis strain Epi0082]
TTGGCAAAGGTTAAAAGTACATTTGAATGTATGGCCTGTGGTTATCAGTCACCGAAATGGATGGGGAAATGTCCAAATTG
TGGCGCATGGAATCAGATGGAAGAAGTTATTGAACATAAACAGAAAGGCCCTAAAAATGCGATTTCTGAATCACAAAGTG
ATAATAAAGTTGAAAAGTTAAAAGATATAACAAAAGAAAGTGTCCCTCGTGATCATACACAGATGAAAGAACTGGATCGT
GTACTTGGAGGAGGAATTGTCCCGGGTTCATTAATACTTATCGGAGGAGACCCTGGAATTGGGAAATCTACATTGCTGCT
GCAAGTTTGTGCAATGCTTTCTCAAAACCATCCTGTACTTTATATTTCCGGAGAGGAATCCGTAAGACAGACAAAACTAC
GAGCCGATCGTCTTTTAGAGGATGCAGGTGAGCTTGATGTCTATGCAGAAACAAACCTTCAAATTATACACGAAACGGTA
AAGAAAACAAAACCGAAATTTTTAGTTATCGATTCAATTCAAACGATATTTCATCCAGAAGTTACGAGTGCACCTGGTTC
TGTATCGCAAGTTAGAGAATGTACTCAAGAATTAATGCGTATCGCAAAGCAGATGAATATCGCCACATTTATCGTGGGGC
ATGTGACGAAAGAGGGCCAGATTGCAGGTCCAAGATTGCTTGAACATATGGTTGATACTGTCCTTTACTTTGAAGGAGAT
ACACATCACAGCTACAGAATATTACGTGCAGTGAAGAATCGTTTTGGTTCAACAAACGAAATGGGTATATTTGAAATGAA
GAATACAGGTCTTAAAGAAGTTCTGAATCCTTCAGAAATGTTCCTTGAAGAACGTACAAAAAATGTAGCAGGTTCGACTA
TTGTTGCAACGATGGAAGGTACGCGACCATTATTGGTTGAAGTTCAGTCGCTCGTAACTCCGACATCCTTTCACAATCCA
AGAAGGATGGCGTCAGGTGTCGATCATAATCGACTGAGTTTACTGATGGCTGTACTGGAGAAAAAACAAGGTTATTTATT
ACAGCAGCAAGATGCATACGTGAAAGTCGCGGGCGGAGTGAAACTTGATGAACCTGCTGTTGATTTAAGTGTTATCGTAA
GTATCGCATCAAGTTATAATGATAAGCCGACACGTGGATATGACTGCTTTATCGGAGAGGTCGGTCTGACAGGTGAGGTA
AGACGTGTTGCACGTATAGAACAGCGCGTACAAGAGGCTGAGAAGCTCGGTTTTAAACGTGTGATCATCCCTAAAAATAA
TATTGGTGGATGGGATTTCCCAGGAAATATCGAAGTCATTGGTGTAACAAATATAAATGAAGCATTGAAAATTGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.671
  radA Streptococcus pneumoniae Rx1

62.996

100

0.631
  radA Streptococcus pneumoniae D39

62.996

100

0.631
  radA Streptococcus pneumoniae R6

62.996

100

0.631
  radA Streptococcus pneumoniae TIGR4

62.996

100

0.631
  radA Streptococcus mitis NCTC 12261

62.996

100

0.631
  radA Streptococcus mitis SK321

62.996

100

0.631

Multiple sequence alignment