Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GL258_RS11535 Genome accession   NZ_CP046363
Coordinates   2171266..2172219 (-) Length   317 a.a.
NCBI ID   WP_164942889.1    Uniprot ID   A0A6G7ETT4
Organism   Macrococcoides canis strain Epi0082     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166266..2177219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL258_RS11510 (GL258_11455) - 2166300..2166578 (+) 279 WP_188019480.1 hypothetical protein -
  GL258_RS11515 (GL258_11460) - 2167035..2168255 (+) 1221 WP_188019481.1 MFS transporter -
  GL258_RS11520 (GL258_11465) - 2168388..2169428 (-) 1041 WP_188019482.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  GL258_RS11525 (GL258_11470) - 2169521..2170327 (-) 807 WP_138072666.1 ABC transporter ATP-binding protein -
  GL258_RS11530 (GL258_11475) - 2170320..2171273 (-) 954 WP_188019483.1 iron chelate uptake ABC transporter family permease subunit -
  GL258_RS11535 (GL258_11480) ceuB 2171266..2172219 (-) 954 WP_164942889.1 ABC transporter permease Machinery gene
  GL258_RS11540 (GL258_11485) - 2172399..2173751 (+) 1353 WP_188019484.1 APC family permease -
  GL258_RS11545 (GL258_11490) - 2173931..2175388 (-) 1458 WP_164953953.1 APC family permease -
  GL258_RS11550 (GL258_11495) - 2175523..2175885 (-) 363 WP_188019485.1 DUF423 domain-containing protein -
  GL258_RS11555 (GL258_11500) - 2175905..2176213 (-) 309 WP_086043482.1 DUF5327 family protein -
  GL258_RS11560 (GL258_11505) - 2176210..2176869 (-) 660 WP_188019486.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34753.43 Da        Isoelectric Point: 10.5554

>NTDB_id=403567 GL258_RS11535 WP_164942889.1 2171266..2172219(-) (ceuB) [Macrococcoides canis strain Epi0082]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLDENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAIIGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAV
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKIMNLGVIIAAIVSATVVVTIGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSVIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=403567 GL258_RS11535 WP_164942889.1 2171266..2172219(-) (ceuB) [Macrococcoides canis strain Epi0082]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGTCC
ATCAAATTTACTTAATTTAGATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCGAGGACGTTTGCTATTATAT
TAGCGGGTGTGGCATTAAGTGTAGCTGGTTTGTTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCA
GGTACGATGGATTTTGCGAAGTTTGGTGTATTGATTGCAATGATATTCTTTGCACAGGCACCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTATCGGTACGATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TCATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGGTG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGACGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATAATGAATCTCGGTGTTATTATTGCAGCAATTGTATCTGCAACAGTAGTGGTAACGATTGGGGTA
TTACCATTTTTAGGATTAATTATTCCGAATATAGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTACCATACAC
AGCACTATTTGGTGCGATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTGATCATCTTCCCTTACGAGATTCCAATCG
GTCTCACGCTTGGTATCGTTGGAAGTGTTATCTTTATGGCAATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7ETT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.837

96.845

0.483

Multiple sequence alignment