Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HWH78_RS29580 Genome accession   NZ_CP056774
Coordinates   6357220..6357744 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CDN129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6352220..6362744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH78_RS29560 (HWH78_29560) - 6352290..6354758 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  HWH78_RS29565 (HWH78_29565) pilM 6354943..6356007 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HWH78_RS29570 (HWH78_29570) pilN 6356007..6356603 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HWH78_RS29575 (HWH78_29575) pilO 6356600..6357223 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HWH78_RS29580 (HWH78_29580) comL/pilP 6357220..6357744 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HWH78_RS29585 (HWH78_29585) pilQ 6357798..6359942 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  HWH78_RS29590 (HWH78_29590) aroK 6359954..6360472 (+) 519 WP_003095833.1 shikimate kinase AroK -
  HWH78_RS29595 (HWH78_29595) aroB 6360522..6361628 (+) 1107 WP_003162482.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=403565 HWH78_RS29580 WP_003095836.1 6357220..6357744(+) (comL/pilP) [Pseudomonas aeruginosa strain CDN129]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=403565 HWH78_RS29580 WP_003095836.1 6357220..6357744(+) (comL/pilP) [Pseudomonas aeruginosa strain CDN129]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362