Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HWH78_RS23545 Genome accession   NZ_CP056774
Coordinates   5055642..5056367 (+) Length   241 a.a.
NCBI ID   WP_003121789.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CDN129     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5050642..5061367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH78_RS23515 (HWH78_23515) - 5050762..5051640 (-) 879 WP_003103323.1 allophanate hydrolase subunit 1 -
  HWH78_RS23520 (HWH78_23520) - 5051642..5053018 (-) 1377 WP_003121791.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HWH78_RS23525 (HWH78_23525) - 5053029..5053277 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  HWH78_RS23530 (HWH78_23530) - 5053354..5054112 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  HWH78_RS23535 (HWH78_23535) - 5054230..5055156 (+) 927 WP_003121790.1 LysR family transcriptional regulator -
  HWH78_RS23540 (HWH78_23540) - 5055210..5055503 (+) 294 WP_003084806.1 hypothetical protein -
  HWH78_RS23545 (HWH78_23545) comF 5055642..5056367 (+) 726 WP_003121789.1 ComF family protein Machinery gene
  HWH78_RS23550 (HWH78_23550) - 5056409..5056729 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  HWH78_RS23555 (HWH78_23555) - 5056797..5057555 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  HWH78_RS23560 (HWH78_23560) - 5057617..5058591 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  HWH78_RS23565 (HWH78_23565) rarD 5058794..5059690 (+) 897 WP_003121788.1 EamA family transporter RarD -
  HWH78_RS23570 (HWH78_23570) - 5060380..5060895 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27078.56 Da        Isoelectric Point: 11.2212

>NTDB_id=403534 HWH78_RS23545 WP_003121789.1 5055642..5056367(+) (comF) [Pseudomonas aeruginosa strain CDN129]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPSYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=403534 HWH78_RS23545 WP_003121789.1 5055642..5056367(+) (comF) [Pseudomonas aeruginosa strain CDN129]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGTCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361